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Protein Overview: rsp-8

General Information:
Name(s) found: rsp-8 / CE18515 [WormBase]
Description(s) found:
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  • WBGene00004705 locus:rsp-8 status:Confirmed UniProt:Q9XTZ2 protein_id:CAB07322.1 [WormBase]
  • pir||T19389 hypothetical protein C18D11.4 - Caenorhabditis elegans [NCBI NR]
  • gi|3874499|emb|CAB07322.1| C. elegans protein C18D11.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17554788|ref|NP_499533.1| SR Protein (splicing factor) family member (rsp-8) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE18515 WBGene00004705 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed TR:Q9XTZ2 protein_id:CAB07322.1 [wormpep150.fasta]
  • 18515 WBGene00004705 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Partially_confirmed TR:Q9XTZ2 protein_id:CAB07322.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • serine/aRginine rich pre-mRNA SPlicing factor (32.7 kD) (rsp-8) [Caenorhabditis elegans]gi|3874499|emb|CAB07322.1| Hypothetical protein C18D11.4 [Caenorhabditis elegans]gi|7496277|pir||T19389 hypothetical protein C18D11.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE18515 WBGene00004705 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Partially_confirmed TR:Q9XTZ2 protein_id:CAB07322.1 [wormpep132.fasta]
  • 18515 WBGene00004705 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed TR:Q9XTZ2 protein_id:CAB07322.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed TR:Q9XTZ2 protein_id:CAB07322.1 [wormpep115.fasta.reversed]
  • CE18515 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed TR:Q9XTZ2 protein_id:CAB07322.1 [wormpep80.hongbin]
  • CE18515 WBGene00004705 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed UniProt:Q9XTZ2_CAEEL protein_id:CAB07322.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE18515 WBGene00004705 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed UniProt:Q9XTZ2_CAEEL protein_id:CAB07322.1| [wormORF-contam.fasta]
  • Hypothetical protein C18D11.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SR Protein (splicing factor) family member (rsp-8) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE18515 WBGene00004705 locus:rsp-8 RNA recognition motif. (aka RRM, RBD, or RNP domain) status:Confirmed UniProt:Q9XTZ2 protein_id:CAB07322.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE18515 WBGene00004705 locus:rsp-8 status:Confirmed UniProt:Q9XTZ2 protein_id:CAB07322.1 [wormpep246-ecoli-contam.fasta]
  • SR Protein (Splicing factor) OS=Caenorhabditis elegans GN=rsp-8 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 309 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: oocyte construction [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHRSRSNSR SQSRSRENSR GRSRSASKSP VYHRRERESS RSRSPRARYG GGGGGGGGGG  60
   61 RGRNQQYDRE NPQPSKCLGV FNLSSYTTEK DLRDVFGEFG EINKCDLVYD RPSGNSRGFG 120
  121 FIYFNLIEDA TAARDKLCNT DLDGHKIRVD FSLTKRGHSP TPGQYMGDRR GGGSSGGGRF 180
  181 GGGGGDRFND RGSRGGDRYG GDRRGGGGGG GGDRYGGGGG DRYGGDRYGG GGGRRGSPDR 240
  241 RGGFRSGGGG GGYMRSGGGG GGPDRRDHRD NDRNGGGGGH RPYDPSFRRR VESYGSGNSG 300
  301 GGGGRRDRY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] PSI-BLAST 43.0 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [164..309] MSA 2.715996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle