| Protein: | rsp-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 309 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsp-8.
| Description | E-value | Query Range |
Subject Range |
|
|
185.0 | [0..2] | [161..29] |
|
Region A: Residues: [1-163] |
1 11 21 31 41 51
| | | | | |
1 MGHRSRSNSR SQSRSRENSR GRSRSASKSP VYHRRERESS RSRSPRARYG GGGGGGGGGG 60
61 RGRNQQYDRE NPQPSKCLGV FNLSSYTTEK DLRDVFGEFG EINKCDLVYD RPSGNSRGFG 120
121 FIYFNLIEDA TAARDKLCNT DLDGHKIRVD FSLTKRGHSP TPG
|
| Detection Method: |  |
| Confidence: | 43.0 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [164-309] |
1 11 21 31 41 51
| | | | | |
1 QYMGDRRGGG SSGGGRFGGG GGDRFNDRGS RGGDRYGGDR RGGGGGGGGD RYGGGGGDRY 60
61 GGDRYGGGGG RRGSPDRRGG FRSGGGGGGY MRSGGGGGGP DRRDHRDNDR NGGGGGHRPY 120
121 DPSFRRRVES YGSGNSGGGG GRRDRY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
