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Protein Overview: npp-19

General Information:
Name(s) found: npp-19 / CE18121 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00003805 locus:npp-19 Nucleoporin NUP53 status:Confirmed UniProt:Q09601 protein_id:CAA86784.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 381 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDA]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSHLNQNTS GRHNSMDLNN SSISNFGTPV EQSTPALLFG KRKATVPSSY TASPLNTASA  60
   61 PCSDIFAVSA PAVPQHLKDT PGSKSVHWSP SLVQSGEKSA AQTQNTPANL SFGGNSSFSA 120
  121 PTKPAPQSIQ TSSFGGQAMH APPLRSLRDK VEPAKKISRR NTFTARSTPL STPITQRVTS 180
  181 RLAEAEEQPM EEEADAADTW VTVFGFQPSQ VSILLNLFSR HGEVVSHQTP SKGNFIHMRY 240
  241 SCVTHAQQAI SRNGTLLDQD TFIGVVQCTN KDVINGSASG IVARSSNIAA AANRSASMYN 300
  301 SFVENDMADQ SVNHNENSVL NSSNVFDANN SLNSSRISVR SGVGMRPLAA DQRTNILQGT 360
  361 PSVRKAPDGL LNKFWNTIGL N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] MSA 9.162994 View MSA. No confident structure predictions are available.
    2 View Details [159..288] PSI-BLAST 26.69897 Crystal structure of the MPPN domain of mouse Nup35
    3 View Details [289..381] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle