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Protein Overview: lin-54

General Information:
Name(s) found: lin-54 / CE17989 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00003037 locus:lin-54 Protein lin-54 status:Partially_confirmed UniProt:Q95QD7 protein_id:CAB05229.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQGEIVYQD DDDYYDESEI YDNYEEGAEF IEVNGQLVPH NPNLQAQQNR PGTSSMIQQH  60
   61 NRSMEVNQGL VKDEPIDTSS HRVYVPPPRP VQRKLFQPGP STPGSSQYTV RNLSNLSGSP 120
  121 SMYDRQPASL PRTVQPMGLE MGNSEQRKVY IDMKDHVSHI RLKTKKKVFA PGQRKPCNCT 180
  181 KSQCLKLYCD CFANGEFCRD CNCKDCHNNI EYDSQRSKAI RQSLERNPNA FKPKIGIARG 240
  241 GITDIERLHQ KGCHCKKSGC LKNYCECYEA KVPCTDRCKC KGCQNTETYR MTRYKNSGGA 300
  301 VSNTNALMSL TNASSTATPD SGPGSVVTDE HGDDYEDMLL SHKPKVEMDP RRFPWYYMTD 360
  361 EVVEAATMCM VAQAEEALNY EKVQTEDEKL INMEKLVLRE FGRCLEQMIT NTTELTQDLD 420
  421 AAPTDDIPGP STSTS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] FFAS03 0.963 Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein
    2 View Details [200..435] FFAS03 1.02 Cytochrome c nitrite reductase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.69799907067579 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle