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Protein Overview: cle-1

General Information:
Name(s) found: cle-1 / CE17816 [WormBase]
Description(s) found:
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  • WBGene00000527 locus:cle-1 status:Confirmed UniProt:G5EDQ4 protein_id:CAB03084.1 [WormBase]
  • pir||T22002 hypothetical protein F39H11.4 - Caenorhabditis elegans [NCBI NR]
  • gi|5713146|gb|AAD47825.1|AF164959_3 CLE-1C protein [Caenorhabditis elegans] [NCBI NR]
  • gi|3877036|emb|CAB03084.1| C. elegans protein C36B1.1c, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|25145765|ref|NP_740898.1| CoLlagen with Endostatin domain family member (cle-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE17816 WBGene00000527 locus:cle-1 cle-1 isoform C status:Partially_confirmed TR:O17866 protein_id:CAB03084.1 [wormpep150.fasta]
  • 17816 WBGene00000527 locus:cle-1 cle-1 isoform C status:Partially_confirmed TR:O17866 protein_id:CAB03084.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CoLlagen with Endostatin domain , alpha 1 type XVIII (cle-1) [Caenorhabditis elegans]gi|3877036|emb|CAB03084.1| Hypothetical protein C36B1.1c [Caenorhabditis elegans]gi|5713146|gb|AAD47825.1| CLE-1C protein [Caenorhabditis elegans]gi|7503015|pir||T220 [nrdb_11152004_Chlamydomonas]
  • locus:cle-1 cle-1 isoform C status:Partially_confirmed TR:O17866 protein_id:CAB03084.1 [wormpep115.fasta.reversed]
  • CE17816 locus:cle-1 cle-1 isoform C status:Partially_confirmed protein_id:CAB03084.1 [wormpep80.hongbin]
  • CE17816 WBGene00000527 locus:cle-1 cle-1 isoform C status:Partially_confirmed UniProt:O17866_CAEEL protein_id:CAB03084.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE17816 WBGene00000527 locus:cle-1 cle-1 isoform C status:Partially_confirmed UniProt:O17866_CAEEL protein_id:CAB03084.1| [wormORF-contam.fasta]
  • Hypothetical protein C36B1.1c [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CLE-1C protein [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CoLlagen with Endostatin domain family member (cle-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE17816 WBGene00000527 locus:cle-1 cle-1 isoform C status:Partially_confirmed UniProt:O17866 protein_id:CAB03084.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE17816 WBGene00000527 locus:cle-1 cle-1 isoform C status:Confirmed UniProt:G5EDQ4 protein_id:CAB03084.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE17816 WBGene00000527 locus:cle-1 status:Confirmed UniProt:G5EDQ4 protein_id:CAB03084.1 [wormpep246-ecoli-contam.fasta]
  • Isoform of G5EGA4, CLE-1C protein OS=Caenorhabditis elegans GN=cle-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 650 amino acids

    Gene Ontology:
    Cellular Component: basement membrane [IDALink to PubMed article]
    cytoplasm [IEALink to PubMed article]
    cell junction [IDALink to PubMed article]
    extracellular matrix [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    phosphate transport [IEALink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    Molecular Function: structural molecule activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLLALFIVL FLSPPAVLGG AEVFENDDFP LLSSEQEPIQ PEIREFSTSP EDSSNPGTVF  60
   61 QVHVPRDDAR VRQARASSEE REFVTQSVML PVEIVEVIDD ETAFEDDGKG AEGSGTPEEF 120
  121 KKTQESSELQ KISDFPPTPA PPPPYPTPQL APHDLRSYEQ QAATTPFQGA PPSNQCTQVC 180
  181 RGEPGPQGPS GNDGIPGSHG APGHQGERGA DGAPGLHGSR GDQGLPGPPG MPGLAGPPGP 240
  241 PGSGTGHGSG ADGPQGPPGL PGAPGRDGTS GVEGQRGPQG PPGPKGDDGV SMESLTDDDI 300
  301 ERIARRVASI QKESNEPMRG DLPEYNSKVH SFTTKGEKGE RGAPGAPGAP APPAYGTLTT 360
  361 GTAVNVHATT VELFASARST SVGQLAFATS SQQLFIRVTN GWKEIQLTHF HPFVETRHST 420
  421 QNSRQNDASH AGRSRTGSAA APWYPKANLD EPQRDAGVHN KDRVIHMIAL SQPFSGNLHG 480
  481 LRGADLQCYR EARAAGYTTT FRAMLSSNVQ DLVRIVHSVD FDTTVVNVAG HHLFPSWRSF 540
  541 VNGAQMNPHA KLFSFDRHDV LNDSRWPDKR VWHGSKDGGI RAEQYCDGWR RADSSLTSLA 600
  601 GHISSNTSIF QSSGSEKCEN KLVVLCVENM SKYHGDRILR LHRITSDFKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..481] PSI-BLAST 53.69897 No description for 1y0fB was found.
    2 View Details [482..650] PSI-BLAST 88.69897 Endostatin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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