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Protein Overview: syp-2

General Information:
Name(s) found: syp-2 / CE17456 [WormBase]
Description(s) found:
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  • WBGene00006376 locus:syp-2 status:Confirmed UniProt:O76388 protein_id:CCD65128.1 [WormBase]
  • pir||T33181 hypothetical protein C24G6.1 - Caenorhabditis elegans [NCBI NR]
  • gi|3193179|gb|AAC19209.1| Synapsis in meiosis abnormal protein 2 [Caenorhabditis elegans] [NCBI NR]
  • gi|17563656|ref|NP_504462.1| SYnaPsis in meiosis abnormal family member (syp-2) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE17456 WBGene00006376 locus:syp-2 status:Partially_confirmed TR:O76388 protein_id:AAC19209.1 [wormpep150.fasta]
  • 17456 WBGene00006376 locus:syp-2 status:Partially_confirmed TR:O76388 protein_id:AAC19209.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein, with a coiled coil domain, SYnaPsis in meiosis abnormal SYP-2 (syp-2) [Caenorhabditis elegans]gi|3193179|gb|AAC19209.1| Synapsis in meiosis abnormal protein 2 [Caenorhabditis elegans]gi|7496408|pir||T33181 hypothetical protein C24G6.1 [nrdb_11152004_Chlamydomonas]
  • locus:syp-2 status:Partially_confirmed TR:O76388 protein_id:AAC19209.1 [wormpep115.fasta.reversed]
  • CE17456 locus:syp-2 status:Partially_confirmed [wormpep80.hongbin]
  • CE17456 WBGene00006376 locus:syp-2 status:Confirmed UniProt:O76388_CAEEL protein_id:AAC19209.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE17456 WBGene00006376 locus:syp-2 status:Confirmed UniProt:O76388_CAEEL protein_id:AAC19209.1| [wormORF-contam.fasta]
  • Synapsis in meiosis abnormal protein 2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SYnaPsis in meiosis abnormal family member (syp-2) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE17456 WBGene00006376 locus:syp-2 status:Confirmed TR:O76388 protein_id:AAC19209.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE17456 WBGene00006376 locus:syp-2 status:Confirmed UniProt:O76388 protein_id:AAC19209.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE17456 WBGene00006376 locus:syp-2 status:Confirmed UniProt:O76388 protein_id:CCD65128.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Uncharacterized protein OS=Caenorhabditis elegans GN=syp-2 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 213 amino acids

    Gene Ontology:
    Cellular Component: synaptonemal complex [IDALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSAHRSSLK KRPGPQDDRR VSFASPVSSS QKTAAVTVAA QTKQPAKAKN LRTMHSTPKK  60
   61 SKPAHDVADI ISLVSKQSDI LDDVSEIEHK MIKQAKMTQD LTMELANSIE RIANMALAES 120
  121 KLSDQMEKQS KKLISLEGKT KELVEKANNW SKTLENRVDA RSHHSTCLND VQAAIKIINN 180
  181 AKINNDGFSE DFSAHYDKLL DLVETLEPWA DKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..213] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle