YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: syp-2
Organism: Caenorhabditis elegans
Length: 213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for syp-2.

Description E-value Query
Range
Subject
Range
gi|39580333, gi|... - gi|39580333|emb|CAE64488.1| Hypothetical protein CBG09213 [Caenorhabditis briggsae], gi|187032029|em...
gi|157775039 - gi|157775039|ref|XP_001665585.1| hypothetical protein CBG09213 [Caenorhabditis briggsae AF16]
318.0 [0..1] [213..1]

Back

Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSAHRSSLK KRPGPQDDRR VSFASPVSSS QKTAAVTVAA QTKQPAKAKN LRTMHSTPKK  60
   61 SKPAHDVADI ISLVSKQSDI LDDVSEIEHK MIKQAKMTQD LTMELANSIE RIANMALAES 120
  121 KLSDQMEKQS KKLISLEGKT KELVEKANNW SKTLENRVDA RSHHSTCLND VQAAIKIINN 180
  181 AKINNDGFSE DFSAHYDKLL DLVETLEPWA DKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle