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Protein Overview: pgl-3

General Information:
Name(s) found: pgl-3 / CE17420 [WormBase]
Description(s) found:
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  • WBGene00003994 locus:pgl-3 status:Confirmed UniProt:G5EBV6 protein_id:CCD65226.1 [WormBase]
  • pir||T33251 hypothetical protein C18G1.4 - Caenorhabditis elegans [NCBI NR]
  • gi|35210498|dbj|BAC87886.1| PGL-3 [Caenorhabditis elegans] [NCBI NR]
  • gi|3168895|gb|AAC17755.1| P granule abnormality protein 3, isoform a [Caenorhabditis elegans] [NCBI NR]
  • gi|17558132|ref|NP_504278.1| P GranuLe abnormality family member (pgl-3) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE17420 WBGene00003994 locus:pgl-3 status:Confirmed TR:O61920 protein_id:AAC17755.1 [wormpep150.fasta]
  • 17420 WBGene00015983 status:Confirmed TR:O61920 protein_id:AAC17755.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein (74.8 kD) (5F235) [Caenorhabditis elegans]gi|3168895|gb|AAC17755.1| Hypothetical protein C18G1.4a [Caenorhabditis elegans]gi|35210498|dbj|BAC87886.1| PGL-3 [Caenorhabditis elegans]gi|7496314|pir||T33251 hypothetical protein C18G1.4 - C [nrdb_11152004_Chlamydomonas]
  • CE17420 WBGene00015983 status:Confirmed TR:O61920 protein_id:AAC17755.1 [wormpep132.fasta]
  • 17420 WBGene00003994 locus:pgl-3 status:Confirmed TR:O61920 protein_id:AAC17755.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • status:Confirmed TR:O61920 protein_id:AAC17755.1 [wormpep115.fasta.reversed]
  • CE17420 status:Partially_confirmed TR:O61920 protein_id:AAC17755.1 [wormpep80.hongbin]
  • CE17420 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:O61920_CAEEL protein_id:AAC17755.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE17420 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:O61920_CAEEL protein_id:AAC17755.1| [wormORF-contam.fasta]
  • P GranuLe abnormality family member (pgl-3) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • PGL-3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C18G1.4a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE17420 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:O61920 protein_id:AAC17755.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE17420 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:G5EBV6 protein_id:CCD65226.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • PGL-3 OS=Caenorhabditis elegans GN=pgl-3 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 693 amino acids

    Gene Ontology:
    Cellular Component: P granule [IDALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: protein binding [IPI]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANKRQIVE VDGIKSYFFP HLAHYLASND ELLVNNIAQA NKLAAFVLGA TDKRPSNEEI  60
   61 AEMILPNDSS AYVLAAGMDV CLILGDDFRP KFDSGAEKLS QLGQAHDLAP IIDDEKKISM 120
  121 LARKTKLKKS NDAKILQVLL KVLGAEEAEE KFVELSELSS ALDLDFDVYV LAKLLGFASE 180
  181 ELQEEIEIIR DNVTDAFEAC KPLLKKLMIE GPKIDSVDPF TQLLLTPQEE SIEKAVSHIV 240
  241 ARFEEASAVE DDESLVLKSQ LGYQLIFLVV RSLADGKRDA SRTIQSLMPS SVRAEVFPGL 300
  301 QRSVFKSAVF LASHIIQVFL GSMKSFEDWA FVGLAEDLES TWRRRAIAEL LKKFRISVLE 360
  361 QCFSQPIPLL PQSELNNETV IENVNNALQF ALWITEFYGS ESEKKSLNQL QFLSPKSKNL 420
  421 LVDSFKKFAQ GLDSKDHVNR IIESLEKSSS SEPSATAKQT TTSNGPTTVS TAAQVVTVEK 480
  481 MPFSRQTIPC EGTDLANVLN SAKIIGESVT VAAHDVIPEK LNAEKNDNTP STASPVQFSS 540
  541 DGWDSPTKSV ALPPKISTLE EEQEEDTTIT KVSPQPQERT GTAWGSGDAT PVPLATPVNE 600
  601 YKVSGFGAAP VASGFGQFAS SNGTSGRGSY GGGRGGDRGG RGAYGGDRGR GGSGDGSRGY 660
  661 RGGDRGGRGS YGEGSRGYQG GRAGFFGGSR GGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..213] deduced N/A No confident structure predictions are available.
    2 View Details [214..492] deduced N/A No confident structure predictions are available.
    3 View Details [493..693] PSI-BLAST 16.69897 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle