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Protein Overview: CE16047

General Information:
Name(s) found: CE16047 [WormBase]
Description(s) found:
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  • WBGene00009732 locus:cope-1 Coatomer subunit epsilon status:Confirmed UniProt:O62246 protein_id:CAB07613.1 [WormBase]
  • pir||T22236 hypothetical protein F45G2.4 - Caenorhabditis elegans [NCBI NR]
  • gi|6647444|sp|O62246.1|COPE_CAEEL RecName: Full=Coatomer subunit epsilon; AltName: Full=Epsilon-coat protein; Short=Epsilon-COP [NCBI NR]
  • gi|3877246|emb|CAB07613.1| C. elegans protein F45G2.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17553466|ref|NP_499771.1| hypothetical protein F45G2.4 [Caenorhabditis elegans] [NCBI NR]
  • Coatomer subunit epsilon OS=Caenorhabditis elegans GN=cope-1 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE16047 WBGene00009732 status:Confirmed SW:O62246 protein_id:CAB07613.1 [wormpep150.fasta]
  • 16047 WBGene00009732 status:Confirmed SW:O62246 protein_id:CAB07613.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • coatomer protein complex (32.8 kD) (3O517) [Caenorhabditis elegans]gi|3877246|emb|CAB07613.1| Hypothetical protein F45G2.4 [Caenorhabditis elegans]gi|7503489|pir||T22236 hypothetical protein F45G2.4 - Caenorhabditis elegansgi|6647444|sp|O62246|COPE_CAE [nrdb_11152004_Chlamydomonas]
  • status:Confirmed SW:O62246 protein_id:CAB07613.1 [wormpep115.fasta.reversed]
  • CE16047 status:Confirmed SW:O62246 protein_id:CAB07613.1 [wormpep80.hongbin]
  • CE16047 WBGene00009732 status:Confirmed UniProt:O62246 protein_id:CAB07613.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16047 WBGene00009732 status:Confirmed UniProt:O62246 protein_id:CAB07613.1| [wormORF-contam.fasta]
  • Hypothetical protein F45G2.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Probable coatomer subunit epsilon (Epsilon-coat protein) (Epsilon-COP) [nr-271106-contam.fasta]
  • F45G2.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE16047 WBGene00009732 locus:cope-1 status:Confirmed UniProt:O62246 protein_id:CAB07613.1 Coatomer subunit epsilon [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 292 amino acids

    Gene Ontology:
    Cellular Component: COPI vesicle coat [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    protein complex assembly [IEALink to PubMed article]
    retrograde vesicle-mediated transport, Golgi to ER [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    Molecular Function: protein binding [IEALink to PubMed article]
    structural molecule activity [IEALink to PubMed article]
    protein transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKLFSIRN YFFLGSYQSC IGEALKFSSK NEEEKQEKDV YLYRSYIAQG QAFIPLKEIP  60
   61 AATKSADLAA VRRYAEFRNN PAAKKKILAE VQEEVASRNI KSEIAAVLAA TILNEADLSQ 120
  121 DAFRAVSRFE GLEARASKVF ILIKMNKRKL AIGEVKKMNQ IDEDATLSQL ANALVTSFGA 180
  181 SGKVKDALYI YSEMSDKYGR TTDLEMHQAV VSILTQDYAA AEELLESALE RDNKDADVLI 240
  241 NSIVSAQLNE KDDDVVERFI SQLKHEHPNH PWVIDFNEKE AEFDRVASDS RA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..292] PSI-BLAST 37.0 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.09193012129784 bayes_pls_golite062009
  • protein binding
    		•  1.52807685989528 bayes_pls_golite062009
  • signal sequence binding
    		•  1.13935627118933 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  0.69717675806841 bayes_pls_golite062009
  • syntaxin binding
    		•  0.0598606763736398 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle