YRC Public Data Repository - Protein Structure Prediction

Protein:	CE16047
Organism:	Caenorhabditis elegans
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE16047.

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	203.0	[0..5]	[291..997]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	201.0	[0..4]	[281..68]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	199.0	[0..4]	[281..67]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	196.0	[0..1]	[291..88]
gi\|115936542, gi... - gi\|115936542\|ref\|XP_001177116.1\| PREDICTED: similar to UDP-N-acetylglucosaminyltransferase [Strongyl...	192.0	[0..7]	[291..152]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKLFSIRN YFFLGSYQSC IGEALKFSSK NEEEKQEKDV YLYRSYIAQG QAFIPLKEIP  60
   61 AATKSADLAA VRRYAEFRNN PAAKKKILAE VQEEVASRNI KSEIAAVLAA TILNEADLSQ 120
  121 DAFRAVSRFE GLEARASKVF ILIKMNKRKL AIGEVKKMNQ IDEDATLSQL ANALVTSFGA 180
  181 SGKVKDALYI YSEMSDKYGR TTDLEMHQAV VSILTQDYAA AEELLESALE RDNKDADVLI 240
  241 NSIVSAQLNE KDDDVVERFI SQLKHEHPNH PWVIDFNEKE AEFDRVASDS RA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.09193012129784	bayes_pls_golite062009
protein binding	1.52807685989528	bayes_pls_golite062009
signal sequence binding	1.13935627118933	bayes_pls_golite062009
peroxisome targeting sequence binding	0.69717675806841	bayes_pls_golite062009
syntaxin binding	0.0598606763736398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: