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Protein Overview: skr-3

General Information:
Name(s) found: skr-3 / CE16037 [WormBase]
Description(s) found:
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  • WBGene00004809 locus:skr-3 status:Confirmed UniProt:G5EE67 protein_id:CAB05516.1 [WormBase]
  • pir||T22198 hypothetical protein F44G3.6 - Caenorhabditis elegans [NCBI NR]
  • gi|3877134|emb|CAB05516.1| C. elegans protein F44G3.6, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17563266|ref|NP_507059.1| SKp1 Related (ubiquitin ligase complex component) family member (skr-3) [Caenorhabditis elegans] [NCBI NR]
  • gi|17027130|gb|AAL34095.1|AF440507_1 SKR-3 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE16037 WBGene00004809 locus:skr-3 status:Confirmed TR:O45517 protein_id:CAB05516.1 [wormpep150.fasta]
  • 16037 WBGene00004809 locus:skr-3 status:Confirmed TR:O45517 protein_id:CAB05516.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • SKp1 Related, ubiquitin ligase complex component, interacts (in yeast two-hybrid) with cullin proteins CUL-1 and CUL-6 (19.0 kD) (skr-3) [Caenorhabditis elegans]gi|3877134|emb|CAB05516.1| Hypothetical protein F44G3.6 [Caenorhabditis elegans]gi|17027130| [nrdb_11152004_Chlamydomonas]
  • locus:skr-3 status:Confirmed TR:O45517 protein_id:CAB05516.1 [wormpep115.fasta.reversed]
  • CE16037 locus:skr-3 status:Confirmed TR:O45517 protein_id:CAB05516.1 [wormpep80.hongbin]
  • CE16037 WBGene00004809 locus:skr-3 status:Confirmed UniProt:O45517_CAEEL protein_id:CAB05516.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE16037 WBGene00004809 locus:skr-3 status:Confirmed UniProt:O45517_CAEEL protein_id:CAB05516.1| [wormORF-contam.fasta]
  • SKR-3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SKp1 Related (ubiquitin ligase complex component) family member (skr-3) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F44G3.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE16037 WBGene00004809 locus:skr-3 status:Confirmed UniProt:O45517 protein_id:CAB05516.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE16037 WBGene00004809 locus:skr-3 status:Confirmed UniProt:G5EE67 protein_id:CAB05516.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • SKR-3 OS=Caenorhabditis elegans GN=skr-3 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 167 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: defense response [IMP]
    ubiquitin-dependent protein catabolic process [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDADSQKQI KLTSSDDKTF TVSRKVISQS KTITDIIQNL GIEESGSTSE DTIPLQKVTS  60
   61 TILEKIITWC EHHADDEPKK VDENKKTVDI SEWDAEFMKV DQGTLFEIIL AANYLDIRGL 120
  121 LDVTTQNVAN MMKGKTPSQI RTLFNIENDF SEEEREAMKK ENAWCED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] PSI-BLAST 63.0 No description for 2e31B was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle