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Protein Overview: nurf-1

General Information:
Name(s) found: nurf-1 / CE15909 [WormBase]
Description(s) found:
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  • WBGene00009180 locus:nurf-1 Nucleosome-remodeling factor subunit NURF301-like status:Confirmed UniProt:Q6BER5 protein_id:CAB04198.1 [WormBase]
  • pir||T21433 hypothetical protein F26H11.3a - Caenorhabditis elegans [NCBI NR]
  • gi|71987489|ref|NP_001022119.1| NURF (nucleosome remodeling factor) complex homolog family member (nurf-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|3876452|emb|CAB04198.1| C. elegans protein F26H11.2e, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • ref|NP_496997.1| bromodomain PHD finger transcription factor (2O693C) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE15909 WBGene00009180 locus:nurf-1 Bromodomain status:Confirmed TR:O45410 protein_id:CAB04198.1 [wormpep150.fasta]
  • 15909 WBGene00009180 Bromodomain status:Confirmed TR:O45410 protein_id:CAB04198.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • bromodomain PHD finger transcription factor (2O693C) [Caenorhabditis elegans]gi|3876452|emb|CAB04198.1| Hypothetical protein F26H11.2e [Caenorhabditis elegans]gi|7499970|pir||T21433 hypothetical protein F26H11.3a - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE15909 WBGene00009180 Bromodomain status:Confirmed TR:O45410 protein_id:CAB04198.1 [wormpep132.fasta]
  • 15909 WBGene00009180 locus:nurf-1 Bromodomain status:Confirmed TR:O45410 protein_id:CAB04198.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • Bromodomain status:Confirmed TR:O45410 protein_id:CAB04198.1 [wormpep115.fasta.reversed]
  • CE15909 Bromodomain status:Confirmed TR:O45410 protein_id:CAB04198.1 [wormpep80.hongbin]
  • CE15909 WBGene00009180 locus:nurf-1 Bromodomain status:Confirmed UniProt:Q6BER5 protein_id:CAB04198.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE15909 WBGene00009180 locus:nurf-1 Bromodomain status:Confirmed UniProt:Q6BER5 protein_id:CAB04198.1| [wormORF-contam.fasta]
  • Hypothetical protein F26H11.2e [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F26H11.2e [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE15909 WBGene00009180 locus:nurf-1 Bromodomain status:Confirmed SW:Q6BER5 protein_id:CAB04198.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE15909 WBGene00009180 locus:nurf-1 status:Confirmed UniProt:Q6BER5 protein_id:CAB04198.1 Nucleosome-remodeling factor subunit NURF301-like [wormpep246-ecoli-contam.fasta]
  • Isoform of Q6BER5, Isoform e of Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans GN=nurf-1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 405 amino acids

    Gene Ontology:
    Cellular Component: proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALHVFFLP AAKPKAEVKK EVINPADITL GGDTYDYVKE QKPTESIATN VSRRRRTSAN  60
   61 LSKSEDDRDK PESQSTAPKS KERRTSEPPA SHVAFHTPGS ATPHDINLSI EHCTCQKIFD 120
  121 ASKLYIQCEL CARWYHGDCV GVAEQTILGL EHWSCEECIE EQERVKDQPA LYCVCQKPYD 180
  181 DTKFYVGCDS CQGWFHPECV GTTRAEAEQA ADYNCPACTR EAEGYESEAS DVSGSSRVSV 240
  241 QLTRADYTHV FELLELLLEH RMSTPFRNPV DLNEFPDYEK FIKKPMDLST ITKKVERTEY 300
  301 LYLSQFVNDV NQMFENAKTY NPKGNAVFKC AETMQEVFDK KLIDVREQMT ARQQMLLLAT 360
  361 AQQQDPMSSI RKRVQSESQR TVDSLDIDSD QLLPLDANLM RLYDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A No confident structure predictions are available.
    2 View Details [89..165] PSI-BLAST 10.522879 Solution structure of PHD domain in PHF8
    3 View Details [166..405] PSI-BLAST 23.522879 No description for 2f6jA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.24093737575291 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle