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Protein Overview: rop-1

General Information:
Name(s) found: rop-1 / CE15613 [WormBase]
Description(s) found:
Found 27 descriptions.
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  • WBGene00004405 locus:rop-1 60 kDa SS-A\/Ro ribonucleoprotein homolog status:Confirmed UniProt:Q27274 protein_id:CAA98241.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 643 amino acids

    Gene Ontology:
    Cellular Component: ribonucleoprotein complex [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMP]
    Molecular Function: RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADELNEFQE AGNFNEEALM RLSNVCARLR RMQMLESDVE ITVVDGELKR VPRQMEKVKD  60
   61 GQVENNAGGF VFPVSDETQV RRFLILGSDK GSYHQSSEKI TIDNAQRIIK IIEQGNGHMV 120
  121 LKELALINAE NRNPKMNAMI FTLAICARIS THDTTKKTEC PMLNAYSDYI RALHDSALDL 180
  181 IPEVCRTPTH LFEFVDYCQT ISESTKAGGA KSSTGWGRSM RNAISKWYTT KTTEKLAMLL 240
  241 TKYPQREGWS HRDLFRLAHP NLMDSRSHGQ SEDRLEREQL FRFAVKGDLV KRKRKMSVEE 300
  301 VAEVEKVWDK KALKLPYTEE QLIKEEQSRA LNLVEAYLKL KNEQSEEVIV AAIKKHGLVR 360
  361 EHLPTTSLNS KLVWETLFDV SMPMTAMIRN LAKMTVVGAL DEKRVDNIVK RLTDQEELRR 420
  421 SRIHPINLLT ARAVYAQGRG DKGSLTWEPN QKICDALEAG FYKAFVNAPP TGKRYCLALD 480
  481 VSGSMTSRVS SSPLSCREAA TGMSLINLHN EAEVRCVAFC DKLTELPFTK DWKIGQVNDY 540
  541 VNNLDFGRTD CGLPMTWATE NNLKFDVFII YTDNDTWAGE IHPFEAIKKY REASGIHDAK 600
  601 VIVMAMQAYD YSIADPSDAG MLDITGFDSA VPQIVHEFVT GKI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..643] PSI-BLAST 129.0 Ro autoantigen complexed with RNAs

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.55976325410124 bayes_pls_golite062009
  • RNA binding
    		•  2.07699174537647 bayes_pls_golite062009
  • DNA binding
    		•  1.67175195853604 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.66804415166051 bayes_pls_golite062009
  • structural molecule activity
    		•  1.59209322686437 bayes_pls_golite062009
  • protein binding
    		•  1.4332924081006 bayes_pls_golite062009
  • protein complex binding
    		•  0.49778084920772 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.4223194470523 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  0.32921284315242 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle