| Protein: | rop-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 643 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rop-1.
| Description | E-value | Query Range |
Subject Range |
|
|
572.0 | [0..1] | [643..1] |
|
Region A: Residues: [1-643] |
1 11 21 31 41 51
| | | | | |
1 MADELNEFQE AGNFNEEALM RLSNVCARLR RMQMLESDVE ITVVDGELKR VPRQMEKVKD 60
61 GQVENNAGGF VFPVSDETQV RRFLILGSDK GSYHQSSEKI TIDNAQRIIK IIEQGNGHMV 120
121 LKELALINAE NRNPKMNAMI FTLAICARIS THDTTKKTEC PMLNAYSDYI RALHDSALDL 180
181 IPEVCRTPTH LFEFVDYCQT ISESTKAGGA KSSTGWGRSM RNAISKWYTT KTTEKLAMLL 240
241 TKYPQREGWS HRDLFRLAHP NLMDSRSHGQ SEDRLEREQL FRFAVKGDLV KRKRKMSVEE 300
301 VAEVEKVWDK KALKLPYTEE QLIKEEQSRA LNLVEAYLKL KNEQSEEVIV AAIKKHGLVR 360
361 EHLPTTSLNS KLVWETLFDV SMPMTAMIRN LAKMTVVGAL DEKRVDNIVK RLTDQEELRR 420
421 SRIHPINLLT ARAVYAQGRG DKGSLTWEPN QKICDALEAG FYKAFVNAPP TGKRYCLALD 480
481 VSGSMTSRVS SSPLSCREAA TGMSLINLHN EAEVRCVAFC DKLTELPFTK DWKIGQVNDY 540
541 VNNLDFGRTD CGLPMTWATE NNLKFDVFII YTDNDTWAGE IHPFEAIKKY REASGIHDAK 600
601 VIVMAMQAYD YSIADPSDAG MLDITGFDSA VPQIVHEFVT GKI
|
| Detection Method: |  |
| Confidence: | 129.0 |
| Match: | 1yvpA |
| Description: | Ro autoantigen complexed with RNAs |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.55976325410124 | bayes_pls_golite062009 |
| RNA binding | 2.07699174537647 | bayes_pls_golite062009 |
| DNA binding | 1.67175195853604 | bayes_pls_golite062009 |
| nucleic acid binding | 1.66804415166051 | bayes_pls_golite062009 |
| structural molecule activity | 1.59209322686437 | bayes_pls_golite062009 |
| protein binding | 1.4332924081006 | bayes_pls_golite062009 |
| protein complex binding | 0.49778084920772 | bayes_pls_golite062009 |
| protein dimerization activity | 0.4223194470523 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.32921284315242 | bayes_pls_golite062009 |
