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Protein Overview: lgc-34

General Information:
Name(s) found: lgc-34 / CE14211 [WormBase]
Description(s) found:
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  • WBGene00020836 locus:lgc-34 status:Confirmed UniProt:O17274 protein_id:CCD73627.1 [WormBase]
  • pir||G88022 protein T27A1.4 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|2429513|gb|AAB71042.1| Hypothetical protein T27A1.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|17536539|ref|NP_493752.1| Ligand-Gated ion Channel family member (lgc-34) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE14211 WBGene00020836 ionic channel protein status:Partially_confirmed TR:O17274 protein_id:AAB71042.1 [wormpep150.fasta]
  • 14211 WBGene00020836 ionic channel protein status:Partially_confirmed TR:O17274 protein_id:AAB71042.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • glycine receptor (44.5 kD) (2A819) [Caenorhabditis elegans]gi|2429513|gb|AAB71042.1| Hypothetical protein T27A1.4 [Caenorhabditis elegans]gi|25395379|pir||G88022 protein T27A1.4 [imported] - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • ionic channel protein status:Partially_confirmed TR:O17274 protein_id:AAB71042.1 [wormpep115.fasta.reversed]
  • CE14211 ionic channel protein status:Partially_confirmed TR:O17274 protein_id:AAB71042.1 [wormpep80.hongbin]
  • CE14211 WBGene00020836 locus:lgc-34 ionic channel protein status:Partially_confirmed UniProt:O17274_CAEEL protein_id:AAB71042.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE14211 WBGene00020836 locus:lgc-34 ionic channel protein status:Partially_confirmed UniProt:O17274_CAEEL protein_id:AAB71042.1| [wormORF-contam.fasta]
  • T27A1.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T27A1.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE14211 WBGene00020836 locus:lgc-34 ionic channel protein status:Partially_confirmed UniProt:O17274 protein_id:AAB71042.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE14211 WBGene00020836 locus:lgc-34 ionic channel protein status:Confirmed UniProt:O17274 protein_id:CCD73627.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE14211 WBGene00020836 locus:lgc-34 status:Confirmed UniProt:O17274 protein_id:CCD73627.1 [wormpep246-ecoli-contam.fasta]
  • Ligand-Gated ion Channel OS=Caenorhabditis elegans GN=lgc-34 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 390 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: catalytic activity [IEALink to PubMed article]
    metal ion binding [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNIFLFLVL LSIGVCSAQK AFHSRRLGTE GQIVGRILSE YDSSSRPPVR DHADNSAILV  60
   61 ITNIFINRLI WHNNYAEVDL YLRQQWQDSR LKYDVDTREG IDEIRLPGNR KIWEPDTYFT 120
  121 SGKELSRNEK NSKHIVVEPS GYIRSSERVL LELPYAYGTM FPFTNSRQFT IKLGSYNYDI 180
  181 DDIVYLWANS PPLVNPIEVS QDLLKGDLTF EEASAGDCVG NYTVGVYSCI DAHVYFSAST 240
  241 ISGLMSWFLP SLFLLIGSWL HFWIHGSWSV PRTISAAVPF FILAAYYIFM REDSYTQAQG 300
  301 AWLAFCLVLT FFSFVEYFLV ICCGGRRSIR YKTLGPQEDH PMGAAKETVE VAYNEGCASF 360
  361 RDNNGIDVIS RVAFPIVTIV FLIIYFIFIV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..390] PSI-BLAST 73.39794 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle