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Protein Overview: pbs-4

General Information:
Name(s) found: pbs-4 / CE13818 [WormBase]
Description(s) found:
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  • WBGene00003950 locus:pbs-4 Proteasome subunit beta type-2 status:Confirmed UniProt:P91477 protein_id:CCD67779.1 [WormBase]
  • gi|7508069|pir||T29206 hypothetical protein T20F5.2 - Caenorhabditis elegans [NCBI NR]
  • gi|17508497|ref|NP_491261.1| Proteasome Beta Subunit family member (pbs-4) [Caenorhabditis elegans] [NCBI NR]
  • gi|1703615|gb|AAB37663.1| Proteasome beta subunit protein 4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE13818 WBGene00003950 locus:pbs-4 peptidase status:Confirmed [wormpep150.fasta]
  • 13818 WBGene00003950 locus:pbs-4 peptidase status:Confirmed [wormpep130-phg-ecoli-orf-rand.fasta]
  • proteasome Beta Subunit (22.8 kD) (pbs-4) [Caenorhabditis elegans]gi|1703615|gb|AAB37663.1| Proteasome beta subunit protein 4 [Caenorhabditis elegans]gi|7508069|pir||T29206 hypothetical protein T20F5.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:pbs-4 peptidase status:Confirmed SW:P91477 protein_id:AAB37663.1 [wormpep115.fasta.reversed]
  • CE13818 locus:pbs-4 peptidase status:Confirmed [wormpep80.hongbin]
  • CE13818 WBGene00003950 locus:pbs-4 peptidase status:Confirmed UniProt:PSB2_CAEEL protein_id:AAB37663.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE13818 WBGene00003950 locus:pbs-4 peptidase status:Confirmed UniProt:PSB2_CAEEL protein_id:AAB37663.1| [wormORF-contam.fasta]
  • T20F5.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • hypothetical protein T20F5.2 - Caenorhabditis elegans [nr-271106-contam.fasta]
  • Proteasome beta subunit protein 4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE13818 WBGene00003950 locus:pbs-4 peptidase status:Confirmed UniProt:P91477 protein_id:AAB37663.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE13818 WBGene00003950 locus:pbs-4 peptidase status:Confirmed UniProt:P91477 protein_id:CCD67779.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE13818 WBGene00003950 locus:pbs-4 status:Confirmed UniProt:P91477 protein_id:CCD67779.1 Proteasome subunit beta type-2 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 202 amino acids

    Gene Ontology:
    Cellular Component: proteasome core complex [IEALink to PubMed article]
    Biological Process: embryonic cleavage [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    ubiquitin-dependent protein catabolic process [IEALink to PubMed article]
    Molecular Function: threonine-type endopeptidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGMHFLVGI STENYVILAA DKATFAYGAI LADSENDKEY RLGKKLTMMC IGEEGDVAQF  60
   61 GDWTKRNLQL YSVRNGYEVS PSCAHHFVRR SIAEGLRSQD HYTVDVLIGG YDDKEDKAFL 120
  121 GSVDYLANGL GQQPYLFRGF CGRFCYAIMD REYKKDMTEA EGLALMNKCI GEAKRRFVAN 180
  181 IPGYKVVIID KKGYRKLDDV LF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] PSI-BLAST 34.045757 CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST IN COMPLEX WITH THE PROTEASOME ACTIVATOR PA26 FROM TRYPANOSOME BRUCEI AT 3.2 ANGSTROMS RESOLUTION


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle