YRC Public Data Repository - Protein Structure Prediction

Protein:	pbs-4
Organism:	Caenorhabditis elegans
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pbs-4.

Description	E-value	Query Range	Subject Range
PSB8_CANLF - Proteasome subunit beta type-8 OS=Canis lupus familiaris GN=PSMB8 PE=1 SV=1	188.0	[0..1]	[199..69]
gi\|109070671 - gi\|109070671\|ref\|XP_001115562.1\| PREDICTED: similar to proteasome beta 8 subunit isoform E2 proprote...	186.0	[0..1]	[199..69]
PSMA_METKA - Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1 PSA_METKA - Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) ...	186.0	[0..2]	[198..34]
PSA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=psmA PE=3 SV=1 PSMA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1	184.0	[0..2]	[198..34]
PSB8_RAT - Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3	184.0	[0..1]	[199..69]
gi\|61357317 - gi\|61357317\|gb\|AAX41370.1\| proteasome subunit beta type 8 [synthetic construct]	184.0	[0..1]	[201..65]
PSA_PYRHO - Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC ... PSMA_PYRHO - Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1	184.0	[0..2]	[198..34]
gi\|4758970, gi\|2... - gi\|56207310\|emb\|CAI18625.1\| proteasome (prosome, macropain) subunit, beta type, 8 (large multifuncti...	183.0	[0..1]	[199..65]
gi\|114606761 - gi\|114606761\|ref\|XP_001167241.1\| PREDICTED: proteasome beta 8 subunit isoform 2 [Pan troglodytes]	183.0	[0..1]	[199..65]
gi\|972990 - gi\|972990\|gb\|AAA75037.1\| 20S proteasome subunit Lmp7 [Mus musculus]	182.0	[0..1]	[199..69]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGMHFLVGI STENYVILAA DKATFAYGAI LADSENDKEY RLGKKLTMMC IGEEGDVAQF  60
   61 GDWTKRNLQL YSVRNGYEVS PSCAHHFVRR SIAEGLRSQD HYTVDVLIGG YDDKEDKAFL 120
  121 GSVDYLANGL GQQPYLFRGF CGRFCYAIMD REYKKDMTEA EGLALMNKCI GEAKRRFVAN 180
  181 IPGYKVVIID KKGYRKLDDV LF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	1fntY
Description:	CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST IN COMPLEX WITH THE PROTEASOME ACTIVATOR PA26 FROM TRYPANOSOME BRUCEI AT 3.2 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits