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Protein Overview: etr-1

General Information:
Name(s) found: etr-1 / CE12942 [WormBase]
Description(s) found:
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  • WBGene00001340 locus:etr-1 status:Confirmed UniProt:G5EF03 protein_id:CCD71491.1 [WormBase]
  • pir||T29469 hypothetical protein T01D1.2a - Caenorhabditis elegans [NCBI NR]
  • gi|17532857|ref|NP_493673.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|1707129|gb|AAB37881.1| Elav-type rna binding protein family protein 1, isoform a [Caenorhabditis elegans] [NCBI NR]
  • gi|151936111|gb|ABS18832.1| ELAV-type RNA binding protein variant A [Caenorhabditis elegans] [NCBI NR]
  • gi|1289522|gb|AAA98566.1| elav-type ribonucleoprotein [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE12942 WBGene00001340 locus:etr-1 RNA-binding protein status:Confirmed TR:Q17385 protein_id:AAB37881.1 [wormpep150.fasta]
  • 12942 WBGene00001340 locus:etr-1 RNA-binding protein status:Confirmed TR:Q17385 protein_id:AAB37881.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ELAV-Type RNA binding protein, muscle specific and required for muscle differentiation (62.3 kD) (etr-1) [Caenorhabditis elegans]gi|1707129|gb|AAB37881.1| Elav-type rna binding protein family protein 1, isoform a [Caenorhabditis elegans]gi|7506855|pir|| [nrdb_11152004_Chlamydomonas]
  • locus:etr-1 RNA-binding protein status:Confirmed TR:Q17385 protein_id:AAB37881.1 [wormpep115.fasta.reversed]
  • CE12942 locus:etr-1 RNA-binding protein status:Confirmed [wormpep80.hongbin]
  • CE12942 WBGene00001340 locus:etr-1 RNA-binding protein status:Confirmed UniProt:Q17385_CAEEL protein_id:AAB37881.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE12942 WBGene00001340 locus:etr-1 RNA-binding protein status:Confirmed UniProt:Q17385_CAEEL protein_id:AAB37881.1| [wormORF-contam.fasta]
  • elav-type ribonucleoprotein [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Elav-type rna binding protein family protein 1, isoform a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE12942 WBGene00001340 locus:etr-1 RNA-binding protein status:Confirmed UniProt:Q17385 protein_id:AAB37881.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE12942 WBGene00001340 locus:etr-1 RNA-binding protein status:Confirmed UniProt:G5EF03 protein_id:CCD71491.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE12942 WBGene00001340 locus:etr-1 status:Confirmed UniProt:G5EF03 protein_id:CCD71491.1 [wormpep246-ecoli-contam.fasta]
  • Isoform of A0A0K3AUP0, ELAV-Type RNA binding-protein family OS=Caenorhabditis elegans GN=etr-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 584 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: oocyte construction [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    locomotion [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAVLPAVL VVPKMESVVV PIAESTVINA KDTTPSTAAD NDVSPSPSEP DTDAIKMFVG  60
   61 QIPRQWNETD CRRLFEKYGS VFSCNILRDK STQASKGCCF VTFYHRKDAI EAQGALHNIK 120
  121 VIEGMHHPVQ MKPADTENRN ERKLFIGQLS KKHNEENLRE IFAKFGHIED CSVLRDQDGK 180
  181 SRGCAFVTFT NRSCAVVATK EMHHSQTMEG CSAPLVVKFA DTQKDKDVKT KSMITGSGAG 240
  241 SPKGGAASLL QNLNPALLQQ LGGGQNYQAV ASLLSLINGQ QGQQQQHQQQ QNVLGILGTV 300
  301 LSALGKLTEG GDDASAKSSS EKPRHQALMT SPAPTATSST SSSASHHHQQ HQQQLSQQQQ 360
  361 QQQHPQQQGL GNPLLGNPAM AAQNQFDAIT MAQIAHQQQM LALQGFAVQQ GAPSQQQQGL 420
  421 AGGMAGAKTT SPVAASLANH QQIALTPFAG GAAALDHFQA MQQYALLANL QATGGVGVQA 480
  481 TTSAAQMVGN GDVKGPDGAN LFIYHLPQDF GDSDLINTFA PFGGILSAKV FIDKVTNLSK 540
  541 CFGFVSYENA QSATNAISAM NGFQIGSKRL KVQLKVDRGN PYNR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..235] PSI-BLAST 36.221849 No description for 2dhsA was found.
    2 View Details [236..478] deduced N/A No confident structure predictions are available.
    3 View Details [479..584] PSI-BLAST 27.522879 solution structure of RNA binding domain 3 in CUG triplet repeat RNA-binding protein 1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle