| Protein: | etr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 584 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for etr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
271.0 | [0..50] | [582..2] |
|
Region A: Residues: [1-235] |
1 11 21 31 41 51
| | | | | |
1 MSGAVLPAVL VVPKMESVVV PIAESTVINA KDTTPSTAAD NDVSPSPSEP DTDAIKMFVG 60
61 QIPRQWNETD CRRLFEKYGS VFSCNILRDK STQASKGCCF VTFYHRKDAI EAQGALHNIK 120
121 VIEGMHHPVQ MKPADTENRN ERKLFIGQLS KKHNEENLRE IFAKFGHIED CSVLRDQDGK 180
181 SRGCAFVTFT NRSCAVVATK EMHHSQTMEG CSAPLVVKFA DTQKDKDVKT KSMIT
|
| Detection Method: |  |
| Confidence: | 36.221849 |
| Match: | 2dhsA |
| Description: | No description for 2dhsA was found. |
|
Region A: Residues: [236-478] |
1 11 21 31 41 51
| | | | | |
1 GSGAGSPKGG AASLLQNLNP ALLQQLGGGQ NYQAVASLLS LINGQQGQQQ QHQQQQNVLG 60
61 ILGTVLSALG KLTEGGDDAS AKSSSEKPRH QALMTSPAPT ATSSTSSSAS HHHQQHQQQL 120
121 SQQQQQQQHP QQQGLGNPLL GNPAMAAQNQ FDAITMAQIA HQQQMLALQG FAVQQGAPSQ 180
181 QQQGLAGGMA GAKTTSPVAA SLANHQQIAL TPFAGGAAAL DHFQAMQQYA LLANLQATGG 240
241 VGV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [479-584] |
1 11 21 31 41 51
| | | | | |
1 QATTSAAQMV GNGDVKGPDG ANLFIYHLPQ DFGDSDLINT FAPFGGILSA KVFIDKVTNL 60
61 SKCFGFVSYE NAQSATNAIS AMNGFQIGSK RLKVQLKVDR GNPYNR
|
| Detection Method: | |
| Confidence: | 27.522879 |
| Match: | 2cpzA |
| Description: | solution structure of RNA binding domain 3 in CUG triplet repeat RNA-binding protein 1 |
Matching Structure (courtesy of the PDB): |
|
