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Protein Overview: sepa-1

General Information:
Name(s) found: sepa-1 / CE12286 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00010808 locus:sepa-1 status:Partially_confirmed UniProt:G5EC37 protein_id:CAB07643.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 702 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription cofactor activity [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLSALTSN PAPSPPPKFA LGKCPATAIH VVSVLRPNRQ RFCYEKTDAG DLIPHKCLIC  60
   61 QPILTEKHIS PYYAVYSDLL EDFVLFGYNT MTGKMEQFIY AFKTDCFVEV NRPEIKYNPA 120
  121 FLVKGNVVVA LNGPEGELVV IERDCRGLLS KESTSYGQFR TLPTAALRTL TLQDLERDRW 180
  181 DRAANSDEVK ISSGNESFDR LYAEYQKNLP RFQVRQCLHL NKEFLCVYSK TSGDYTRLEY 240
  241 IDETGDFQKI SCTLCTCEVT ESNLIPLYVE RNASELVIHV HNTENNQIEQ YIYDVRTFGF 300
  301 VQVKRNLVYD PKKITSGLNL FMAENIDNRK VYMIMRGRDG RLQKETSGSG GFEKMQPVAV 360
  361 KTFQVQWVEM KTEFEKKKAS TERVEPQHPV QTEGEDIMET VLAMVESFNC DLRKELGLTQ 420
  421 DQEIPRKAPR VESAETEENI VKNLEKLQIA KDPEEPTTAA SEGGNTYGYQ ELDDTMSEGL 480
  481 LEKEAESKHQ DANEPEPVKN VTYEPDVAAM DKKKKRRELK SRLNKINAQI DELEKRRMER 540
  541 AGKKQVVSSS VPSEEAAQVE APASPALAEN TNQISNEETP KIDIFEGYNG SFLFGTNTSK 600
  601 EWIVEDIRNH MVGKLLKAFW PRIQNVEEMN GELFKKLIAN ARKCETEILE ASNDRDEYYR 660
  661 LMQLTVDQIL KKTLKKDQRA TEHNHQQPTQ SSDELAKNHE KN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] MSA 1.024968 View MSA. No confident structure predictions are available.
    2 View Details [104..196] deduced N/A No confident structure predictions are available.
    3 View Details [197..308] MSA 2.026981 View MSA. No confident structure predictions are available.
    4 View Details [309..389] deduced N/A No confident structure predictions are available.
    5 View Details [390..470] PSI-BLAST 20.522879 NMR structure of CBP TAZ1/CITED2 complex
    6 View Details [471..593] deduced N/A No confident structure predictions are available.
    7 View Details [594..702] PSI-BLAST 40.522879 Solution structure of the KIX domain of CBP bound to the transactivation domain of c-Myb


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle