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Protein Overview: exos-3

General Information:
Name(s) found: exos-3 / CE11462 [WormBase]
Description(s) found:
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  • WBGene00010325 locus:exos-3 status:Confirmed UniProt:Q93830 protein_id:CAB01875.1 [WormBase]
  • pir||T22989 hypothetical protein F59C6.4 - Caenorhabditis elegans [NCBI NR]
  • gi|3877902|emb|CAB01875.1| C. elegans protein F59C6.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17507825|ref|NP_492751.1| EXOSome (multiexonuclease complex) component family member (exos-3) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE11462 WBGene00010325 status:Partially_confirmed TR:Q93830 protein_id:CAB01875.1 [wormpep150.fasta]
  • 11462 WBGene00010325 status:Partially_confirmed TR:Q93830 protein_id:CAB01875.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • predicted CDS, exosome complex exonuclease rrp40 (1L95) [Caenorhabditis elegans]gi|3877902|emb|CAB01875.1| Hypothetical protein F59C6.4 [Caenorhabditis elegans]gi|7504749|pir||T22989 hypothetical protein F59C6.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q93830 protein_id:CAB01875.1 [wormpep115.fasta.reversed]
  • CE11462 status:Predicted TR:Q93830 protein_id:CAB01875.1 [wormpep80.hongbin]
  • CE11462 WBGene00010325 locus:exos-3 status:Confirmed UniProt:Q93830_CAEEL protein_id:CAB01875.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE11462 WBGene00010325 locus:exos-3 status:Confirmed UniProt:Q93830_CAEEL protein_id:CAB01875.1| [wormORF-contam.fasta]
  • Hypothetical protein F59C6.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F59C6.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE11462 WBGene00010325 locus:exos-3 status:Partially_confirmed TR:Q93830 protein_id:CAB01875.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE11462 WBGene00010325 locus:exos-3 status:Confirmed UniProt:Q93830 protein_id:CAB01875.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • EXOSome (Multiexonuclease complex) component OS=Caenorhabditis elegans GN=exos-3 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVYLPGDVI NEPSSSDSSI IGYGISVRGQ TRIATQPGAF HNDDGKVWLN VHSKRYIPQE  60
   61 GDRVIAIVTS KTGDFFRLDI GTAEYAMINF TNFEGATKRN RPNLKTGDII YATVFDTTPR 120
  121 TEAELTCVDD EKRARGMGQL NGGFMFKVSL NHCRRLINPS CKILQTVGKF FKFEITVGMN 180
  181 GRIWISASTS DDIIKIHDII NKSEFITDED ELITLVQNNY TRSVSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 53.154902 No description for 2nn6G was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.68323473451419 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.850020261215126 bayes_pls_golite062009
  • protein binding
    		•  0.469863842628997 bayes_pls_golite062009
  • RNA binding
    		•  0.0954653278078664 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle