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Protein Overview: ldb-1

General Information:
Name(s) found: ldb-1 / CE11352 [WormBase]
Description(s) found:
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  • WBGene00002261 locus:ldb-1 status:Confirmed UniProt:Q8I4H8 protein_id:CAB02672.1 [WormBase]
  • pir||T22888 hypothetical protein F58A3.1b - Caenorhabditis elegans [NCBI NR]
  • gi|3877837|emb|CAB02672.1| C. elegans protein F58A3.1b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17568275|ref|NP_509845.1| LIM domain Binding Protein family member (ldb-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE11352 WBGene00002261 locus:ldb-1 status:Confirmed TR:Q8I4H8 protein_id:CAB02672.1 [wormpep150.fasta]
  • 11352 WBGene00002261 locus:ldb-1 status:Confirmed TR:Q8I4H8 protein_id:CAB02672.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • LIM domain Binding Protein, required for some neuronal function (ldb-1) [Caenorhabditis elegans]gi|3877837|emb|CAB02672.1| Hypothetical protein F58A3.1b [Caenorhabditis elegans]gi|7504577|pir||T22888 hypothetical protein F58A3.1b - Caenorhabditis elegan [nrdb_11152004_Chlamydomonas]
  • locus:ldb-1 status:Confirmed TR:Q8I4H8 protein_id:CAB02672.1 [wormpep115.fasta.reversed]
  • CE11352 locus:ldb-1 status:Confirmed TR:Q9U3E2 protein_id:CAB02672.1 [wormpep80.hongbin]
  • CE11352 WBGene00002261 locus:ldb-1 status:Confirmed UniProt:Q8I4H8_CAEEL protein_id:CAB02672.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE11352 WBGene00002261 locus:ldb-1 status:Confirmed UniProt:Q8I4H8_CAEEL protein_id:CAB02672.1| [wormORF-contam.fasta]
  • Hypothetical protein F58A3.1b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • LIM domain Binding Protein family member (ldb-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE11352 WBGene00002261 locus:ldb-1 status:Confirmed UniProt:Q8I4H8 protein_id:CAB02672.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • Isoform of Q9U3E2, LIM Domain Binding protein OS=Caenorhabditis elegans GN=ldb-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 578 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: mechanosensory behavior [IMPLink to PubMed article]
    vulval development [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    locomotion [IMPLink to PubMed article]
    multicellular organismal development [IEALink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IDALink to PubMed article]
    protein binding [IDALink to PubMed article]
    transcription cofactor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHRPPSARP PLNHVDQLKS LQATALGKPG MRSQATEPQP IGNTVSPLEF RIHDMNRRLY  60
   61 IFSSTGVSEN DQQQWWDAFS HEFFDDDCKL WFVIGSEPVA FASRERYIIN RQFIPKFFRS 120
  121 IFDSGMRELQ YVLRGPSREC TLANGSQAYE NENVLQITRY DQSSQFEVNT EGKLYVEFAP 180
  181 FDEVMNYRIK AWTLELKRSN EFVYNQNTAD YRVEAQNPEQ ENKPRMGFFK STFNLMTMLK 240
  241 ILDPMQSIMS SAKSAPAITP REVMKRTLFQ HHQVRQQNMR QQQLNQQMMI PAPEPEKPKP 300
  301 ARKRQRKPAA NPRGSKKATA AAAAAAAAAT NGVPPTVPTA SPANNQQFPP NPMTSQFQQM 360
  361 SYPDVMVVGE PSMMGSEFGE NDERTISRVE NSQYDPNAMQ MQSLGQGPNS SMNINGRNMM 420
  421 NQHHPGMQPP PGQQHMPPHS MGSQMPTSMH NPMHMPPGSM QGHGGMPPMP STMANQMPPP 480
  481 NLPPHTMSNQ MPNSRMPPMQ GQMPPSGMPG QMSNPNMMGS GMPPMSMSSQ MPGSMSNPMP 540
  541 NQMPGGMQMN QMPPPNYSQY TGGPPPQWPP PNSAMITG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] deduced N/A No confident structure predictions are available.
    2 View Details [204..314] deduced N/A No confident structure predictions are available.
    3 View Details [315..502] PSI-BLAST 6.69897 Sec24
    4 View Details [503..578] FFAS03 1.14 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle