| Protein: | ldb-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 578 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ldb-1.
| Description | E-value | Query Range |
Subject Range |
|
|
404.0 | [0..23] | [392..2] |
|
Region A: Residues: [1-203] |
1 11 21 31 41 51
| | | | | |
1 MFHRPPSARP PLNHVDQLKS LQATALGKPG MRSQATEPQP IGNTVSPLEF RIHDMNRRLY 60
61 IFSSTGVSEN DQQQWWDAFS HEFFDDDCKL WFVIGSEPVA FASRERYIIN RQFIPKFFRS 120
121 IFDSGMRELQ YVLRGPSREC TLANGSQAYE NENVLQITRY DQSSQFEVNT EGKLYVEFAP 180
181 FDEVMNYRIK AWTLELKRSN EFV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [204-314] |
1 11 21 31 41 51
| | | | | |
1 YNQNTADYRV EAQNPEQENK PRMGFFKSTF NLMTMLKILD PMQSIMSSAK SAPAITPREV 60
61 MKRTLFQHHQ VRQQNMRQQQ LNQQMMIPAP EPEKPKPARK RQRKPAANPR G
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [315-502] |
1 11 21 31 41 51
| | | | | |
1 SKKATAAAAA AAAAATNGVP PTVPTASPAN NQQFPPNPMT SQFQQMSYPD VMVVGEPSMM 60
61 GSEFGENDER TISRVENSQY DPNAMQMQSL GQGPNSSMNI NGRNMMNQHH PGMQPPPGQQ 120
121 HMPPHSMGSQ MPTSMHNPMH MPPGSMQGHG GMPPMPSTMA NQMPPPNLPP HTMSNQMPNS 180
181 RMPPMQGQ
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [503-578] |
1 11 21 31 41 51
| | | | | |
1 MPPSGMPGQM SNPNMMGSGM PPMSMSSQMP GSMSNPMPNQ MPGGMQMNQM PPPNYSQYTG 60
61 GPPPQWPPPN SAMITG
|
| Detection Method: | |
| Confidence: | 1.14 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
