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Protein Overview: stau-1

General Information:
Name(s) found: stau-1 / CE11107 [WormBase]
Description(s) found:
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  • WBGene00018857 locus:stau-1 status:Partially_confirmed UniProt:Q94239 protein_id:CCD62871.1 [WormBase]
  • pir||G89455 protein F55A4.5 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|17568157|ref|NP_508196.1| STAUfen (dsRNA binding protein) homolog family member (stau-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|1519663|gb|AAB07566.1| Hypothetical protein F55A4.5 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE11107 WBGene00018857 status:Partially_confirmed TR:Q94239 protein_id:AAB07566.1 [wormpep150.fasta]
  • 11107 WBGene00018857 status:Partially_confirmed TR:Q94239 protein_id:AAB07566.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • staufen (XB646) [Caenorhabditis elegans]gi|1519663|gb|AAB07566.1| Hypothetical protein F55A4.5 [Caenorhabditis elegans]gi|25513687|pir||G89455 protein F55A4.5 [imported] - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q94239 protein_id:AAB07566.1 [wormpep115.fasta.reversed]
  • CE11107 status:Partially_confirmed TR:Q94239 protein_id:AAB07566.1 [wormpep80.hongbin]
  • CE11107 WBGene00018857 status:Partially_confirmed UniProt:Q94239_CAEEL protein_id:AAB07566.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE11107 WBGene00018857 status:Partially_confirmed UniProt:Q94239_CAEEL protein_id:AAB07566.1| [wormORF-contam.fasta]
  • Hypothetical protein F55A4.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F55A4.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE11107 WBGene00018857 locus:stau-1 status:Partially_confirmed UniProt:Q94239 protein_id:AAB07566.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE11107 WBGene00018857 locus:stau-1 status:Partially_confirmed UniProt:Q94239_CAEEL protein_id:AAB07566.1 [wormbase_c-elegans_197_11-26-2008_reversed.fasta]
  • CE11107 WBGene00018857 locus:stau-1 status:Partially_confirmed UniProt:Q94239 protein_id:CCD62871.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • STAUfen (DsRNA binding protein) homolog OS=Caenorhabditis elegans GN=stau-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 705 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: rRNA catabolic process [IEALink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    ribonuclease III activity [IEALink to PubMed article]
    double-stranded RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVFETTLT QKMDGVMIVQ ETTTDLADTL ENASISAEKS EQKPERLHPQ HWCGQHKFEA  60
   61 DSPTNFYDYT NAKEKEKSAM CRVAEIARFN KLRHVYNLQD ESGPAHKKLF TVKLVLTEAE 120
  121 TFEGSGTSIK RAQQASAEAA LKGTKLPLPT EKPTKKRIND TTKPHRVLQN VCRTLQYQMP 180
  181 NYISCNPPVY PDPGCPLPEH ILLPLESMAL YAPPFPTLPI DPARPQGPKL QAVIVNINGK 240
  241 SIATGIGETY PLAKQDAAAK ALAVLSPLLR EHQNGSDNGF GKENIPVHKQ KSVISDIHEK 300
  301 AYQLKVNVVF EVLKEEGPPH DRQYVVRCAF VTSGNVVKAE AVGKGKKKKS AQQEACTQLL 360
  361 ATVEHLTPEN NPVALATNVC KTQKKLAAMN REPKRKTIVK DKKMDPLYGH QINPVSRLIQ 420
  421 VTQAKSKEHP TFELVAEHGV SKYKEFIIQV KYGDDVQEGK GPNKRLAKRA AAEAMLESIG 480
  481 FVKPLPPPGK SLLKKMIDCD PSLPEISHWT GPPPTAVSVS TSEPDTSEAA QLSPEQTDIS 540
  541 EKRELSPDTE KRRVTFNSQV HACPPPGDQD YPNSIVQSLK KDAIVEGKIR RLKRSKENRR 600
  601 ALTAEQIVEL SERAQSYLQT KNTTIQSSQS SSAHHHLEQL SDFFKFSLQY TSFPQVGIDQ 660
  661 HFTIVSIGLE APLVGHGTGC STTEADENAA LDAIAKLKEL SASKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 35.0 RNase III endonuclease catalytic domain; RNase III, C-terminal domain
    2 View Details [150..281] FFAS03 1.14 Solution structure of the dsRBD from hypothetical protein BAB26260
    3 View Details [282..531] PSI-BLAST 22.69897 No description for 2yt4A was found.
    4 View Details [532..628] PSI-BLAST 7.0 PKR kinase domain- eIF2alpha- AMP-PNP complex.
    5 View Details [629..705] FFAS03 2.13 Staufen, domain III

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.602312874472495 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.473490732431909 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.473490732431909 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle