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Protein Overview: swan-1

General Information:
Name(s) found: swan-1 / CE10918 [WormBase]
Description(s) found:
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  • WBGene00009977 locus:swan-1 status:Confirmed UniProt:Q93758 protein_id:CAB02115.1 [WormBase]
  • pir||T22553 hypothetical protein F53C11.8 - Caenorhabditis elegans [NCBI NR]
  • gi|3877477|emb|CAB02115.1| C. elegans protein F53C11.8, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17561280|ref|NP_506418.1| Seven WD repeats, AN11 family member (swan-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE10918 WBGene00009977 locus:swan-1 Yeast hypothetical protein YPL247C like status:Partially_confirmed TR:Q93758 protein_id:CAB02115.1 [wormpep150.fasta]
  • 10918 WBGene00009977 Yeast hypothetical protein YPL247C like status:Partially_confirmed TR:Q93758 protein_id:CAB02115.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • WD-repeat protein (42.9 kD) (5O286) [Caenorhabditis elegans]gi|3877477|emb|CAB02115.1| Hypothetical protein F53C11.8 [Caenorhabditis elegans]gi|7504040|pir||T22553 hypothetical protein F53C11.8 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE10918 WBGene00009977 Yeast hypothetical protein YPL247C like status:Partially_confirmed TR:Q93758 protein_id:CAB02115.1 [wormpep132.fasta]
  • 10918 WBGene00009977 locus:swan-1 Yeast hypothetical protein YPL247C like status:Partially_confirmed TR:Q93758 protein_id:CAB02115.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • Yeast hypothetical protein YPL247C like status:Partially_confirmed TR:Q93758 protein_id:CAB02115.1 [wormpep115.fasta.reversed]
  • CE10918 Yeast hypothetical protein YPL247C like status:Partially_confirmed TR:Q93758 protein_id:CAB02115.1 [wormpep80.hongbin]
  • CE10918 WBGene00009977 locus:swan-1 Yeast hypothetical protein YPL247C like status:Confirmed UniProt:Q93758_CAEEL protein_id:CAB02115.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE10918 WBGene00009977 locus:swan-1 Yeast hypothetical protein YPL247C like status:Confirmed UniProt:Q93758_CAEEL protein_id:CAB02115.1| [wormORF-contam.fasta]
  • Hypothetical protein F53C11.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Seven WD repeats, AN11 family member (swan-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE10918 WBGene00009977 locus:swan-1 Yeast hypothetical protein YPL247C like status:Confirmed TR:Q93758 protein_id:CAB02115.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE10918 WBGene00009977 locus:swan-1 Yeast hypothetical protein YPL247C like status:Confirmed UniProt:Q93758 protein_id:CAB02115.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE10918 WBGene00009977 locus:swan-1 status:Confirmed UniProt:Q93758 protein_id:CAB02115.1 [wormpep246-ecoli-contam.fasta]
  • Seven WD repeats, AN11 family OS=Caenorhabditis elegans GN=swan-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 388 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: negative regulation of phagocytosis, engulfment [IGI]
    regulation of axon extension [IGI]
    negative regulation of cell migration [IGI]
    regulation of Rac GTPase activity [IPI]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNGHAVNG EAHVMQQVAQ QPAPPGPLAP QGIGRQNEIV IGGRDRRCEI YKFTSDQQLY  60
   61 ASAWSNKNDI KFRLAVGTVS DVSVNPCAAN KVSIVQLKDE TGELVETASF PMEFPANAVG 120
  121 FIPDPDNVYP DLIATTSDCL RLWRVVDGKV HPDAVMINNT NSQYGSALTS FDWNELEPRY 180
  181 IGVSSVDTTC TIYDVEVGCA IGQTKPTAPF TLKTQLIAHD KPVHDIEFAK INGGRDHFAT 240
  241 VGADGSARMF DLRHLNHSTI VYEDPNKEKL QRLSWNKQEP YFMALFAENS QEVQILDIRM 300
  301 PCNILCRLRN HTGPVNGIAW APHSPHHICT AGDDSQALIW DLQQVPRPVD DPILAYSAGG 360
  361 EVNQIHWGPV HSNWIAICFN KTLEILRV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..388] PSI-BLAST 64.522879 No description for 2gnqA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle