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Protein Overview: ubxn-3

General Information:
Name(s) found: ubxn-3 / CE10730 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00018586 locus:ubxn-3 status:Partially_confirmed UniProt:O17370 protein_id:AAB71287.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 632 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTASLEDD QREKLRQYTE FTHQQDYEVA IGTLASLNWN LEQAIEAHLM QEDKNDDEDP  60
   61 EILETIPAAA SGRNAGASSS SRFEPEVINI EDDEMPATRG RRRGRAVTPD ETTTVDNQVK 120
  121 RLRIDDGSSS SSNGAATHHR GAAIPRQKRG QATEPTPSSS GSSSASFSSR RGTRANPVPP 180
  181 PNQEPAHPES ARQNGGILAS RHNNHNNQQN NHHHHHQRIP INPRRVDVFN VDSDEDDDSM 240
  241 AIAYEDDDDG VHEVHHSEVC EKDRAISAFL APKLGNEVVA RGSGPPNGRI PMIPDGFSSV 300
  301 SDALRNFVAI FSDRFCSTPQ TQAFMPPFYT EPLPAAVKEA FDHPNSEHRR PLLFYINHDR 360
  361 SIAANIFASQ VLCSETVSTL IRHQYVLFPW DITSDSNLML FLEYLQAANM GDVRTIIQRL 420
  421 AMSKIESFPL MAIVVKERNS YRLVDYCRGT DTSDQVMEKL LSGVSEYSDI RMNEQSERRE 480
  481 REEREAIRNQ QEAEYKASLA ADKARMEAKQ QEIEEQRLEE ERKLREEEEE CVRRQTVAST 540
  541 VPEEPPASAP LAEIINVKFR LPEGGQDMRR FRRLESIQTL INYLSSKGYS PDKFKYFNSD 600
  601 FPKKEITRHF DLSHNFADTK WPAREQIFVE EI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run knl-1 No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] deduced N/A No confident structure predictions are available.
    2 View Details [100..186] PSI-BLAST 22.0 No description for 2dzmA was found.
    3 View Details [187..266] deduced N/A No confident structure predictions are available.
    4 View Details [267..448] PSI-BLAST 24.69897 No description for 2dlxA was found.
    5 View Details [449..588] PSI-BLAST 5.522879 No description for 2i1jA was found.
    6 View Details [589..632] PSI-BLAST 14.30103 The deposition and citation title is: Solution structure of the UBX domain of D0H8S2298E protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • protein binding
    		•  1.17286764835548 bayes_pls_golite062009
  • binding
    		•  1.01026276997684 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle