| Protein: | ubxn-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 632 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubxn-3.
| Description | E-value | Query Range |
Subject Range |
|
|
648.0 | [0..10] | [630..6] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MDLTASLEDD QREKLRQYTE FTHQQDYEVA IGTLASLNWN LEQAIEAHLM QEDKNDDEDP 60
61 EILETIPAAA SGRNAGASSS SRFEPEVINI EDDEMPATR
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [100-186] |
1 11 21 31 41 51
| | | | | |
1 GRRRGRAVTP DETTTVDNQV KRLRIDDGSS SSSNGAATHH RGAAIPRQKR GQATEPTPSS 60
61 SGSSSASFSS RRGTRANPVP PPNQEPA
|
| Detection Method: | |
| Confidence: | 22.0 |
| Match: | 2dzmA |
| Description: | No description for 2dzmA was found. |
|
Region A: Residues: [187-266] |
1 11 21 31 41 51
| | | | | |
1 HPESARQNGG ILASRHNNHN NQQNNHHHHH QRIPINPRRV DVFNVDSDED DDSMAIAYED 60
61 DDDGVHEVHH SEVCEKDRAI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [267-448] |
1 11 21 31 41 51
| | | | | |
1 SAFLAPKLGN EVVARGSGPP NGRIPMIPDG FSSVSDALRN FVAIFSDRFC STPQTQAFMP 60
61 PFYTEPLPAA VKEAFDHPNS EHRRPLLFYI NHDRSIAANI FASQVLCSET VSTLIRHQYV 120
121 LFPWDITSDS NLMLFLEYLQ AANMGDVRTI IQRLAMSKIE SFPLMAIVVK ERNSYRLVDY 180
181 CR
|
| Detection Method: | |
| Confidence: | 24.69897 |
| Match: | 2dlxA |
| Description: | No description for 2dlxA was found. |
|
Region A: Residues: [449-588] |
1 11 21 31 41 51
| | | | | |
1 GTDTSDQVME KLLSGVSEYS DIRMNEQSER REREEREAIR NQQEAEYKAS LAADKARMEA 60
61 KQQEIEEQRL EEERKLREEE EECVRRQTVA STVPEEPPAS APLAEIINVK FRLPEGGQDM 120
121 RRFRRLESIQ TLINYLSSKG
|
| Detection Method: | |
| Confidence: | 5.522879 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
|
Region A: Residues: [589-632] |
1 11 21 31 41 51
| | | | | |
1 YSPDKFKYFN SDFPKKEITR HFDLSHNFAD TKWPAREQIF VEEI
|
| Detection Method: | |
| Confidence: | 14.30103 |
| Match: | 2cr5A |
| Description: | The deposition and citation title is: Solution structure of the UBX domain of D0H8S2298E protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.17286764835548 | bayes_pls_golite062009 |
| binding | 1.01026276997684 | bayes_pls_golite062009 |
