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Protein Overview: clec-79

General Information:
Name(s) found: clec-79 / CE10676 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00018548 locus:clec-79 status:Partially_confirmed UniProt:Q20528 protein_id:CCD71379.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 575 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: cell adhesion [IEALink to PubMed article]
    Molecular Function: sugar binding [IEALink to PubMed article]
    hyaluronic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKVVSVWL GFIVSAFFTT SWGLLLNSDE GFEKACKQSG GDYTQRAGND SNTGDICLMK  60
   61 FSVVTSDEQD ARDFCELNAP WRLREARRET QDSIPVVICD VEATYTCNAG WIQMYGYCFK 120
  121 MSEMHDVYTH EEAEKYCKEQ AGPSFHGEIA SIHQRYILTP WKNYFRTIKQ FWVQAPETWN 180
  181 EYVVKTNKVD GDYLALAFFG DHFEFSVPVN SLIKINGNVK LQALCQYKPA ITPAEINYMG 240
  241 RRYSEIYYPT VPVKDGIIVR SASSYTRSSN QLDVCKKVLK PYMYTKESHF FPDPDSMEQL 300
  301 AKLEPETYSL MRSPLVSEID QSYRNRHNCQ TPGAHYEVVL GGKKTANFVV EHDKIKGKPT 360
  361 CDNMMSASIS HFKGQAPEFH PMVDSQSLPI WCKLGKVVKY KFDVPPGWLD FRRLNGQVVL 420
  421 HWLSEEKLKF TDAAKACEAK GAHLAGINSL KEAEQLGNHV VGAKLNNEQF WLGAQRKTEC 480
  481 LENNDWKAPC TRGKIFEWNN NVATDFREEW WKKNNNNHSP NPSGTGQRCL SFAFGDLYWS 540
  541 EKGDKGFLDD IECHNELRYF CSKMATFTEC EENCD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] deduced N/A No confident structure predictions are available.
    2 View Details [107..246] PSI-BLAST 15.522879 Pancreatitis-associated protein 1 from human
    3 View Details [247..396] deduced N/A No confident structure predictions are available.
    4 View Details [397..575] PSI-BLAST 18.30103 No description for 2h2rA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.13629480035749 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.44675717945952 bayes_pls_golite062009
  • protein binding
    		•  0.059857076934361 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle