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Protein Overview: CE09413

General Information:
Name(s) found: CE09413 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00008852 locus:ubql-1 status:Confirmed UniProt:G5EFF7 protein_id:CAA95799.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 502 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: protein modification process [IEALink to PubMed article]
    nucleotide-excision repair [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATESALIKV HVKSPSNKYD VEIAADASVS ELKDKVLVFV PTANKEQVCI IYTGKILKDE  60
   61 ETLTQHKIAD GHTVHLVIRN QARPTPAPAA ATPTASSAPS SNPTPSSQPN PTNNPFAAMG 120
  121 GMGSPADILN NPDAMRSVMD NPITQQLLGN PEFMRTIIQS NPQFQALIER NPEVGHILND 180
  181 PNVMRQTMEM IRNPNMFQEM MRNHDQAIRN LQGIPGGEAA LERLYNDVQE PLLNSATNSL 240
  241 SGNPFASLRG DQSSEPRVDR AGQENNEALP NPWASNANQA TNNQSNNRSA DFNSLLDSPG 300
  301 ISSLMEQMMS NPSMQASMFS PEVINSIRQN MSNNPGLIDS IVGQIPSARD NPQISEGIRR 360
  361 SFPQMLNMMS DPSVMEAMRN PRVSEAFRQI QEGFSTLRRE APQLLNLFQA GAMGGGAFGS 420
  421 DANASSAGAN SANGLADLFN SMNMGGGRPS STAAPVNPEQ TYASQLEQLQ SMGFSDRARN 480
  481 VAALTATFGD LNAAVERLLN SP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] PSI-BLAST 18.0 Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3)
    2 View Details [96..248] FFAS03 0.984 Structure of the DNA repair protein hHR23a
    3 View Details [249..423] PSI-BLAST 7.045757 Sec24
    4 View Details [424..502] PSI-BLAST 9.30103 Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle