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Protein Overview: CE08804

General Information:
Name(s) found: CE08804 [WormBase]
Description(s) found:
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  • WBGene00016740 Putative 40S ribosomal protein S4-like status:Confirmed UniProt:O01513 protein_id:CCD67579.1 [WormBase]
  • pir||T28926 hypothetical protein C48B6.2 - Caenorhabditis elegans [NCBI NR]
  • gi|3915556|sp|O01513.1|YS4L_CAEEL RecName: Full=Putative 40S ribosomal protein S4-like [NCBI NR]
  • gi|1938565|gb|AAC48162.1| Hypothetical protein C48B6.2 [Caenorhabditis elegans] [NCBI NR]
  • gi|17506101|ref|NP_491972.1| hypothetical protein C48B6.2 [Caenorhabditis elegans] [NCBI NR]
  • Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE08804 WBGene00016740 ribosomal protein status:Confirmed SW:O01513 protein_id:AAC48162.1 [wormpep150.fasta]
  • 08804 WBGene00016740 ribosomal protein status:Confirmed SW:O01513 protein_id:AAC48162.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNA-binding S4 (21.1 kD) (1H493) [Caenorhabditis elegans]gi|1938565|gb|AAC48162.1| Hypothetical protein C48B6.2 [Caenorhabditis elegans]gi|7497593|pir||T28926 hypothetical protein C48B6.2 - Caenorhabditis elegansgi|3915556|sp|O01513|YS4L_CAEEL Putative [nrdb_11152004_Chlamydomonas]
  • ribosomal protein status:Confirmed SW:O01513 protein_id:AAC48162.1 [wormpep115.fasta.reversed]
  • CE08804 ribosomal protein status:Confirmed SW:O01513 protein_id:AAC48162.1 [wormpep80.hongbin]
  • CE08804 WBGene00016740 ribosomal protein status:Confirmed UniProt:YS4L_CAEEL protein_id:AAC48162.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE08804 WBGene00016740 ribosomal protein status:Confirmed UniProt:YS4L_CAEEL protein_id:AAC48162.1| [wormORF-contam.fasta]
  • C48B6.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C48B6.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Putative 40S ribosomal protein S4-like [nr-271106-contam.fasta]
  • CE08804 WBGene00016740 ribosomal protein status:Confirmed UniProt:O01513 protein_id:AAC48162.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE08804 WBGene00016740 ribosomal protein status:Confirmed UniProt:O01513 protein_id:CCD67579.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE08804 WBGene00016740 status:Confirmed UniProt:O01513 protein_id:CCD67579.1 Putative 40S ribosomal protein S4-like [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 183 amino acids

    Gene Ontology:
    Cellular Component: small ribosomal subunit [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRKLKTHEQ KLLKKTDFMS WQVDQQGKQG DMLRKFYVKK REHYALYNTL AAKSREVADL  60
   61 IKNLSESDPF RSKCTEDMLT KFYAAGLVPT SDTLERIGKV TGASFARRRL PVVMRNIGMC 120
  121 ESVKTASDLV EQGHVRIGTK LVTDPAFMVT RSSEDMITWT KASKIKKHVM DYNNTRDDFD 180
  181 LMD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 37.39794 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle