YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08804
Organism:	Caenorhabditis elegans
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08804.

Description	E-value	Query Range	Subject Range
gi\|29422405 - gi\|29422405\|gb\|AAO84598.1\| small ribosomal protein 4 [Breutelia chrysocoma]	201.0	[0..25]	[183..2]
gi\|46486574 - gi\|46486574\|gb\|AAS98723.1\| ribosomal protein subunit 4 [Hypnodendron diversifolium]	201.0	[0..25]	[183..1]
gi\|77019151 - gi\|77019151\|emb\|CAH60181.1\| chloroplast 30S ribosomal protein S4 [Grimmia austrofunalis]	200.0	[0..25]	[183..1]
gi\|14276326 - gi\|14276326\|gb\|AAK58201.1\| small ribosomal protein 4 [Bartramia halleriana]	199.0	[0..25]	[183..1]
gi\|46486556 - gi\|46486556\|gb\|AAS98714.1\| ribosomal protein subunit 4 [Hypnodendron vitiense]	199.0	[0..25]	[183..1]
gi\|63101091 - gi\|63101091\|gb\|AAY33170.1\| small ribosomal protein 4 [Platyneuron laticostatum]	199.0	[0..23]	[183..2]
gi\|67035698 - gi\|67035698\|gb\|AAY62780.1\| small ribosomal protein subunit 4 [Dryptodon patens]	199.0	[0..25]	[183..1]
gi\|67035706 - gi\|67035706\|gb\|AAY62784.1\| small ribosomal protein subunit 4 [Racomitrium crispipilum]	199.0	[0..25]	[183..1]
gi\|3098148 - gi\|3098148\|gb\|AAC15522.1\| small ribosomal protein 4 [Encalypta rhaptocarpa]	199.0	[0..25]	[183..1]
gi\|77019135 - gi\|77019135\|emb\|CAH60174.1\| chloroplast 30S ribosomal protein S4 [Funaria hygrometrica]	198.0	[0..25]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRKLKTHEQ KLLKKTDFMS WQVDQQGKQG DMLRKFYVKK REHYALYNTL AAKSREVADL  60
   61 IKNLSESDPF RSKCTEDMLT KFYAAGLVPT SDTLERIGKV TGASFARRRL PVVMRNIGMC 120
  121 ESVKTASDLV EQGHVRIGTK LVTDPAFMVT RSSEDMITWT KASKIKKHVM DYNNTRDDFD 180
  181 LMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	1s1hD
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits