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Protein Overview: CE08730

General Information:
Name(s) found: CE08730 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00016665 status:Partially_confirmed UniProt:Q18644 protein_id:CCD67370.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 469 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate metabolic process [IEALink to PubMed article]
    chitin catabolic process [IEALink to PubMed article]
    Molecular Function: chitinase activity [IEALink to PubMed article]
    hydrolase activity, hydrolyzing O-glycosyl compounds [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNETEPDV IKRIIGYYIQ KESSEISTVG LSRLTHAVFG SLRVQLNGTF EIGNAFSKRK  60
   61 FKNWQRAVKN SSSNVKSMIS IGRWDSVTQL SSVLLNVKSR RMFIESIVDF LKEHQLDGID 120
  121 LFWRWVPLAV QSEFCLFLEE VKIEFLNQEK QYILSITAPP VGIENYEDGY DIEEIIERVD 180
  181 FVNVYSMNYA APWSNQWGTP TGPSAPLYGG LDARRKFSVD YTMKYYIRYT RKPEKFNLII 240
  241 PFYVRHWRNV ENAIKPGIEV FRNVTLQNNG AIGEVYMSRW TAESDGIELS NPSWDDTTKT 300
  301 LYIWKPETKT FITFETEKSI EAKANYVKSM NLGGVWIWLM ENDDQDNSMI EAVSGQFGNP 360
  361 SDDQSQYEHV SDKRIIGFYT EDATTEITAS ELSKLTHAVF GFLYLKTNGT FDILNDRGKG 420
  421 RFKNLNRLIK YENLNVKMMF SIGGWADSTN FRSVVADVKI KRFEILNYF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..361] PSI-BLAST 90.69897 Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase
    2 View Details [362..469] FFAS03 3.59 Psychrophilic chitinase B

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chitinase activity
    		•  6.40555694403866 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.91170236789651 bayes_pls_golite062009
  • growth factor activity
    		•  1.90639563461312 bayes_pls_golite062009
  • receptor binding
    		•  1.65049220192308 bayes_pls_golite062009
  • amylase activity
    		•  1.38959979746158 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.34796838721403 bayes_pls_golite062009
  • chitin binding
    		•  1.29046765706168 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.83219070974164 bayes_pls_golite062009
  • imaginal disc growth factor activity
    		•  0.779343156561511 bayes_pls_golite062009
  • binding
    		•  0.720909632154373 bayes_pls_golite062009
  • protein binding
    		•  0.648259867811962 bayes_pls_golite062009
  • pattern binding
    		•  0.629401292223251 bayes_pls_golite062009
  • catalytic activity
    		•  0.534516847146079 bayes_pls_golite062009
  • glucosidase activity
    		•  0.50219358960551 bayes_pls_golite062009
  • hydrolase activity
    		•  0.178746202646272 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.121443733937724 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle