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Protein Overview: CE08687

General Information:
Name(s) found: CE08687 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00016607 60S ribosome subunit biogenesis protein NIP7 homolog status:Confirmed UniProt:P91154 protein_id:CCD65161.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 180 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLTEEETS LVFAKLASFI GDNVSMLIDR NDGDYCFRNH KERVYYCSEN LMRQAACIAR  60
   61 EPLLSFGTCL GKFTKSKKFH LQITALDYLA PYAKFKVWLK PNAEQQFLYG NNILKSGIAR 120
  121 MTDGTPTHAG IVVYSMTDVP LGFGVSAKGT SDSKRADPTA LVVLHQCDLG EYLRNESHLA 180
  181

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] PSI-BLAST 97.69897 Crystal Structure of Northeast Structural Genomics Consortium Target HR2118: A Human Homolog of Saccharomyces cerevisiae Nip7p

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  2.67504868533195 bayes_pls_golite062009
  • binding
    		•  1.85616760502339 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.26170105245043 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25899985044692 bayes_pls_golite062009
  • DNA binding
    		•  1.00086161863786 bayes_pls_golite062009
  • transcription factor activity
    		•  0.459074630080185 bayes_pls_golite062009
  • protein binding
    		•  0.377070376016177 bayes_pls_golite062009
  • ligase activity
    		•  0.365702917579223 bayes_pls_golite062009
  • catalytic activity
    		•  0.147263815852997 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle