YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: nab-1

General Information:
Name(s) found: nab-1 / CE08684 [WormBase]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • WBGene00003516 locus:nab-1 status:Partially_confirmed UniProt:H2KYW1 protein_id:CCD65154.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 721 amino acids

    Gene Ontology:
    Cellular Component: presynaptic active zone [IDA]
    synapse part [IDA]
    plasma membrane [IDA]
    Biological Process: NONE FOUND
    Molecular Function: protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTASELLSD DARARFSHTK ALFEQLERQQ DVPSFYSPRL QRQPPPPLPP KPPSQCPPSP  60
   61 MSQVERNFSD LAADLDRIQS SPATSRFIQN KSSTLPSSYS DSTQQYSFEN TVATSQYGGL 120
  121 QTNNNNNNIN MNSFEPYWRN GSIYRRQFEG NGKPFGEEND GISPTTNGVK HTTYAVVKTP 180
  181 KETELETTSE NRGLMETRRG LSPERPDVDL TNRKVSFSTA PIPVFSAFSV EDYDRKNEDI 240
  241 DPVASCAEYE LERRLERMDL FEVDLEKGAE GLGVSIIGMG VGADSGLEKL GIFVKSITPG 300
  301 GAVHRDGRIR VCDQIVSVDG KSLVGVSQLY AANTLRSTSN RVTFTIGREQ NLEESEVAQL 360
  361 IQQSLEHDRM RMMGDEEDDI EEPPPPPSQM PQLPIEQDRP TTSMITKEEI EIRSKIAALE 420
  421 LELDVTHKKA EQYHEVLSST KSHCDQLEKQ NEQANYMIKN YQEREKELLN REENHVEQLR 480
  481 DKDVHYASLV RQLKERIDEL ESKLEEAEER RHSIQNLELI ELREKLKEKV EKRNEGMAYR 540
  541 PGGELPHEDK AVMVNLETIT PSTKKDAEVS VGSSWTEEYS SPCESPVPRI SEPASPALPH 600
  601 KLTHRKLLFP LRKKYAENEF WRATCQPVGL QALHWTVDDV CQLLVSMGLD KYVPEFTINK 660
  661 IDGAKFLELD GNKLKAMGIQ NHSDRSLIKK KVKGMKNKIE RERKQLERES RTRVIAHTIP 720
  721 M

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 19.39794 solution structure of the split PH-PDZ Supramodule of alpha-Syntrophin
    2 View Details [251..366] PSI-BLAST 23.39794 Solution structure of the PDZ domain of Spinophilin/NeurabinII protein
    3 View Details [367..721] PSI-BLAST 31.154902 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.566291652083235 bayes_pls_golite062009
  • protein binding
    		•  0.52823753548825 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle