| Protein: | nab-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 721 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nab-1.
| Description | E-value | Query Range |
Subject Range |
|
|
308.0 | [0..60] | [681..191] |
|
Region A: Residues: [1-250] |
1 11 21 31 41 51
| | | | | |
1 MTTASELLSD DARARFSHTK ALFEQLERQQ DVPSFYSPRL QRQPPPPLPP KPPSQCPPSP 60
61 MSQVERNFSD LAADLDRIQS SPATSRFIQN KSSTLPSSYS DSTQQYSFEN TVATSQYGGL 120
121 QTNNNNNNIN MNSFEPYWRN GSIYRRQFEG NGKPFGEEND GISPTTNGVK HTTYAVVKTP 180
181 KETELETTSE NRGLMETRRG LSPERPDVDL TNRKVSFSTA PIPVFSAFSV EDYDRKNEDI 240
241 DPVASCAEYE
|
| Detection Method: |  |
| Confidence: | 19.39794 |
| Match: | 1z87A |
| Description: | solution structure of the split PH-PDZ Supramodule of alpha-Syntrophin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [251-366] |
1 11 21 31 41 51
| | | | | |
1 LERRLERMDL FEVDLEKGAE GLGVSIIGMG VGADSGLEKL GIFVKSITPG GAVHRDGRIR 60
61 VCDQIVSVDG KSLVGVSQLY AANTLRSTSN RVTFTIGREQ NLEESEVAQL IQQSLE
|
| Detection Method: | |
| Confidence: | 23.39794 |
| Match: | 1wf8A |
| Description: | Solution structure of the PDZ domain of Spinophilin/NeurabinII protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.566291652083235 | bayes_pls_golite062009 |
| protein binding | 0.52823753548825 | bayes_pls_golite062009 |
|
Region A: Residues: [367-721] |
1 11 21 31 41 51
| | | | | |
1 HDRMRMMGDE EDDIEEPPPP PSQMPQLPIE QDRPTTSMIT KEEIEIRSKI AALELELDVT 60
61 HKKAEQYHEV LSSTKSHCDQ LEKQNEQANY MIKNYQEREK ELLNREENHV EQLRDKDVHY 120
121 ASLVRQLKER IDELESKLEE AEERRHSIQN LELIELREKL KEKVEKRNEG MAYRPGGELP 180
181 HEDKAVMVNL ETITPSTKKD AEVSVGSSWT EEYSSPCESP VPRISEPASP ALPHKLTHRK 240
241 LLFPLRKKYA ENEFWRATCQ PVGLQALHWT VDDVCQLLVS MGLDKYVPEF TINKIDGAKF 300
301 LELDGNKLKA MGIQNHSDRS LIKKKVKGMK NKIERERKQL ERESRTRVIA HTIPM
|
| Detection Method: | |
| Confidence: | 31.154902 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
