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Protein Overview: CE08369

General Information:
Name(s) found: CE08369 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00007706 status:Confirmed UniProt:Q9XVS2 protein_id:CAB02757.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 454 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: mRNA processing [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRNRRDGPQ RDVKRERRSR SRSPRRSRIG AAVGSNNGNS SSNNRMVFIT NIAYEARWVD  60
   61 LKSLVREKGG EVAFCELLED RNGKPKGNAV VEFETREGAE KCVENLQKFD WKGRTIIAKE 120
  121 IRDPNAFFRT IKTETGIDYL SRTGGGGAGG RGPPPKDLDR PTRTGTYDLF GLNMEFLRQH 180
  181 NIEPPLCERI FIANLAFNVG TDKLYEVFGM AGKITWMDFR IDKEGKSKGV CVIQYTHPIE 240
  241 AVQAVSMLNG QRLFDRNLVV KMDRFDKELE HKEGGLPRGL ESIGMGLGAE GAPLSNVHGM 300
  301 FPGDASVPFT APAAPFVGGP QVVSAGGFGG VVEQANFARS VMNNGPFGGN AGVGGAGGAT 360
  361 FAQPDVFGVN GAGGLAGAAT PQATRVIIIR NLPSDYTWQI VRDRVRNFGE VDSVDMMAPG 420
  421 AARIRFATFQ DAERARAALY GSTVEGRMIS VDYA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] PSI-BLAST 30.09691 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [185..454] PSI-BLAST 17.69897 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle