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Protein Overview: pabp-2

General Information:
Name(s) found: pabp-2 / CE08254 [WormBase]
Description(s) found:
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  • WBGene00003904 locus:pabp-2 status:Confirmed UniProt:Q93233 protein_id:CAB02750.1 [WormBase]
  • pir||T19356 hypothetical protein C17E4.5 - Caenorhabditis elegans [NCBI NR]
  • gi|3874370|emb|CAB02750.1| C. elegans protein C17E4.5, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17505625|ref|NP_492504.1| PolyA Binding Protein (nuclear) family member (pabp-2) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE08254 WBGene00003904 locus:pab-3 RNA binding protein (RNP like) status:Confirmed TR:Q93233 protein_id:CAB02750.1 [wormpep150.fasta]
  • 08254 WBGene00003904 locus:pab-3 RNA binding protein (RNP like) status:Confirmed TR:Q93233 protein_id:CAB02750.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • poly binding protein II like (22.6 kD) (1J998) [Caenorhabditis elegans]gi|3874370|emb|CAB02750.1| Hypothetical protein C17E4.5 [Caenorhabditis elegans]gi|7496190|pir||T19356 hypothetical protein C17E4.5 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:pab-3 RNA binding protein (RNP like) status:Confirmed TR:Q93233 protein_id:CAB02750.1 [wormpep115.fasta.reversed]
  • CE08254 RNA binding protein (RNP like) status:Confirmed TR:Q93233 protein_id:CAB02750.1 [wormpep80.hongbin]
  • CE08254 WBGene00003904 locus:pabp-2 RNA binding protein (RNP like) status:Confirmed UniProt:Q93233_CAEEL protein_id:CAB02750.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE08254 WBGene00003904 locus:pabp-2 RNA binding protein (RNP like) status:Confirmed UniProt:Q93233_CAEEL protein_id:CAB02750.1| [wormORF-contam.fasta]
  • Hypothetical protein C17E4.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • PolyA Binding protein family member (pab-3) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE08254 WBGene00003904 locus:pabp-2 RNA binding protein (RNP like) status:Confirmed TR:Q93233 protein_id:CAB02750.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE08254 WBGene00003904 locus:pabp-2 RNA binding protein (RNP like) status:Confirmed UniProt:Q93233 protein_id:CAB02750.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE08254 WBGene00003904 locus:pabp-2 status:Confirmed UniProt:Q93233 protein_id:CAB02750.1 [wormpep246-ecoli-contam.fasta]
  • PolyA Binding Protein (Nuclear) OS=Caenorhabditis elegans GN=pabp-2 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 205 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    positive regulation of embryonic development [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNDIIDDD VLNIEDMTGD DADLSAIEGD LNEIEEEQKK LKAIQNEMVG HMNLNTSSQS  60
   61 NSSQSLLTPE EKAEADAKSV YVGNVDYGAT AEEIEQHFHG CGSVSRVTIQ CDRFSGHPKG 120
  121 FAYVEFTEKE GMQNALAMTD SLLRGRQIKV DPKRTNKPGM STTNRPPFRG RGGRGRGNVI 180
  181 VKYVYAGGFR PRGRGARRRP GFAPY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..205] PSI-BLAST 26.045757 Poly(A)-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.86761524461453 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.984778969024386 bayes_pls_golite062009
  • protein binding
    		•  0.426607329742248 bayes_pls_golite062009
  • RNA binding
    		•  0.0622892880461364 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle