| Protein: | pabp-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 205 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pabp-2.
| Description | E-value | Query Range |
Subject Range |
|
|
172.0 | [0..2] | [205..145] |
|
|
170.0 | [0..2] | [205..120] |
|
|
170.0 | [0..4] | [205..172] |
|
Region A: Residues: [1-205] |
1 11 21 31 41 51
| | | | | |
1 MSDNDIIDDD VLNIEDMTGD DADLSAIEGD LNEIEEEQKK LKAIQNEMVG HMNLNTSSQS 60
61 NSSQSLLTPE EKAEADAKSV YVGNVDYGAT AEEIEQHFHG CGSVSRVTIQ CDRFSGHPKG 120
121 FAYVEFTEKE GMQNALAMTD SLLRGRQIKV DPKRTNKPGM STTNRPPFRG RGGRGRGNVI 180
181 VKYVYAGGFR PRGRGARRRP GFAPY
|
| Detection Method: |  |
| Confidence: | 26.045757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.86761524461453 | bayes_pls_golite062009 |
| nucleic acid binding | 0.984778969024386 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
| RNA binding | 0.0622892880461364 | bayes_pls_golite062009 |
