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Protein Overview: snx-1

General Information:
Name(s) found: snx-1 / CE07927 [WormBase]
Description(s) found:
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  • WBGene00004927 locus:snx-1 status:Confirmed UniProt:Q9GYJ9 protein_id:CCD63142.1 [WormBase]
  • gi|9798125|gb|AAF98602.1| Sorting nexin protein 1 [Caenorhabditis elegans] [NCBI NR]
  • pir||T31063 hypothetical protein C05D9.1 - Caenorhabditis elegans [NCBI NR]
  • gi|17550150|ref|NP_508216.1| Sorting NeXin family member (snx-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE07927 WBGene00004927 locus:snx-1 status:Partially_confirmed TR:Q9GYJ9 protein_id:AAF98602.1 [wormpep150.fasta]
  • 07927 WBGene00004927 locus:snx-1 status:Partially_confirmed TR:Q9GYJ9 protein_id:AAF98602.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • sorting nexin (54.1 kD) (XB751) [Caenorhabditis elegans]gi|9798125|gb|AAF98602.1| Sorting nexin protein 1 [Caenorhabditis elegans]gi|7495438|pir||T31063 hypothetical protein C05D9.1 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:snx-1 status:Partially_confirmed TR:Q9GYJ9 protein_id:AAF98602.1 [wormpep115.fasta.reversed]
  • CE07927 status:Partially_confirmed TR:Q9GYJ9 protein_id:AAF98602.1 [wormpep80.hongbin]
  • CE07927 WBGene00004927 locus:snx-1 status:Confirmed UniProt:Q9GYJ9_CAEEL protein_id:AAF98602.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07927 WBGene00004927 locus:snx-1 status:Confirmed UniProt:Q9GYJ9_CAEEL protein_id:AAF98602.1| [wormORF-contam.fasta]
  • Sorting NeXin family member (snx-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Sorting nexin protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE07927 WBGene00004927 locus:snx-1 status:Confirmed TR:Q9GYJ9 protein_id:AAF98602.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE07927 WBGene00004927 locus:snx-1 status:Confirmed UniProt:Q9GYJ9 protein_id:AAF98602.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE07927 WBGene00004927 locus:snx-1 status:Confirmed UniProt:Q9GYJ9 protein_id:CCD63142.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Sorting NeXin OS=Caenorhabditis elegans GN=snx-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 472 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell communication [IEALink to PubMed article]
    Molecular Function: protein binding [IEALink to PubMed article]
    phosphoinositide binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSEEDVHTN SYAGRTVAVM EQPDLFSDDC DEINLGNEDT PPSKLRLHTT EEPKESSSPA  60
   61 VINSIEDHDQ YVGNDNHYAQ ISPEPALSNF KVTMREFEKR GDGMNAYIVY KLETEVSGVV 120
  121 GYTKQHYETW RRFSDFLGLH GKIVEKYLAK GIVIPQPPEK SISALTKTKT NSDPAMSREV 180
  181 GIQRARQLER YICRLIQHPR MRNDCDVRDF LTIESDLPKA VQTAALSSFG VKKIFKNFQV 240
  241 VFSKMAFHME EGDRWFEQVQ SQVDELDEAL RKLYTVTETL VASRRDMATS GEQLGKALSM 300
  301 LAACEESTSL SRALSSLTDV TENVSAVYGK QAEVDNSKFS ESIYEYIMLI SALKDVFGER 360
  361 VRAWQQWQDA QQTLARKRDQ KTKIDLSAGG RNERSDQLKG EIEDTVQKMD QLEQHFIELS 420
  421 KAIREEVARF DADRKQDMKK MLVEYMESMI HTHTELLHLW EKFEPEANNI RV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] deduced N/A No confident structure predictions are available.
    2 View Details [86..224] PSI-BLAST 28.045757 No description for 2i4kA was found.
    3 View Details [225..472] PSI-BLAST 18.221849 No description for 2ficA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle