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Protein Overview: CE07818

General Information:
Name(s) found: CE07818 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00007236 Methylthioribose-1-phosphate isomerase status:Partially_confirmed UniProt:Q93169 protein_id:CAB02711.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 366 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cellular biosynthetic process [IEALink to PubMed article]
    cellular metabolic process [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKINKIVN GPIPDSFLFD ESKRLDSLKF DGTNLEVLDQ LLLPHEFKYI PVEGVSDAFA  60
   61 VIKSMQVRGA PLIAVVGSLG LLLEIQKASE LDSESIIQKI NFLISSRPTA VDLRNSLNGL 120
  121 KPILESQDYS DVVKLEKCRS YLLNVYTDEK LQNRILVWNA YQELLSAFPD KEKLTVMTIC 180
  181 NTGSLATISW GTALGVIRAL HSENRLKLVY VLETRPYNQG IRLTSIELLH GEVPFKLITD 240
  241 SMAAWAMKNH QVDCVLTGAD NVARNGDTAN KIGTYMLAVL CKHHNINFYP VVPFTTINKN 300
  301 IATGEEIKIE ERPSAEMLRV NGVLIGNSEC PVWNPAFDVT PAHLITKILT DFGNWPPEML 360
  361 EQQIPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..366] PSI-BLAST 116.0 X-ray crystal structure of aIF-2B alpha subunit-related translation initiation factor [Thermotoga maritima]

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation initiation factor activity
    		•  10.1099993541596 bayes_pls_golite062009
  • translation regulator activity
    		•  5.74669335554405 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.56128901279222 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  1.40526340076289 bayes_pls_golite062009
  • catalytic activity
    		•  1.31732715713197 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.09424756417577 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.987801998446038 bayes_pls_golite062009
  • binding
    		•  0.946249883212717 bayes_pls_golite062009
  • DNA binding
    		•  0.730721872216867 bayes_pls_golite062009
  • deaminase activity
    		•  0.518630450774121 bayes_pls_golite062009
  • S-methyl-5-thioribose-1-phosphate isomerase activity
    		•  0.511292518421556 bayes_pls_golite062009
  • transcription factor activity
    		•  0.195177143221873 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle