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Protein Overview: oma-2

General Information:
Name(s) found: oma-2 / CE07613 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00003865 locus:oma-2 status:Confirmed UniProt:Q23359 protein_id:CCD64069.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 393 amino acids

    Gene Ontology:
    Cellular Component: centrosome [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    P granule [IDALink to PubMed article]
    Biological Process: oocyte development [IMP]
    positive regulation of growth rate [IMP]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMLKENVIQ NNEARTESSV EPSHPDMMET VPEEQQKPIS HIDDLLSETA NLMAVKEQLL  60
   61 KEIAENEHIH SMQMRALQNL PQEAILPLQY HADPRRRHRM QKPESYKTVI CQAWLESKTC 120
  121 AFAENCRFAH GEEELRPSLI EARQNNKYRT KLCDKYTTTG LCPYGKRCLF IHPDNGPNAY 180
  181 IRADKLFEVS QRHALADLRD QMEHHIMNGG RSTAGPQQFD MFARPCTPDE PAANMPLGPT 240
  241 PVSIRGPRYE LPSKKPLETE EAGNRPPSSW PLDPSTFFAL DSLNMATRPI SPFESMLIGA 300
  301 AGNMQYSMLG KQSTPGGVSG YSSSGSTPSQ DSDSSPLTAA SAAADAACQA NSESAQSILL 360
  361 KSINNPMIGN ETTLPIPGLD QLAMDIAKHL ELW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] deduced N/A No confident structure predictions are available.
    2 View Details [98..173] PSI-BLAST 23.0 Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
    3 View Details [174..393] FFAS03 1.09 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle