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Protein Overview: lgc-32

General Information:
Name(s) found: lgc-32 / CE07517 [WormBase]
Description(s) found:
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  • WBGene00020569 locus:lgc-32 status:Partially_confirmed UniProt:Q22588 protein_id:AAK39299.1 [WormBase]
  • pir||T16900 hypothetical protein T19D7.1 - Caenorhabditis elegans [NCBI NR]
  • gi|17569861|ref|NP_508139.1| Ligand-Gated ion Channel family member (lgc-32) [Caenorhabditis elegans] [NCBI NR]
  • gi|13775489|gb|AAK39299.1| Ligand-gated ion channel protein 32 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE07517 WBGene00020569 status:Predicted TR:Q22588 protein_id:AAK39299.1 [wormpep150.fasta]
  • 07517 WBGene00020569 status:Predicted TR:Q22588 protein_id:AAK39299.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • predicted CDS, putative protein, with at least 3 transmembrane domains (XB293) [Caenorhabditis elegans]gi|13775489|gb|AAK39299.1| Hypothetical protein T19D7.1 [Caenorhabditis elegans]gi|7507988|pir||T16900 hypothetical protein T19D7.1 - Caenorhabditis e [nrdb_11152004_Chlamydomonas]
  • status:Predicted TR:Q22588 protein_id:AAK39299.1 [wormpep115.fasta.reversed]
  • CE07517 status:Predicted TR:Q22588 protein_id:AAK39299.1 [wormpep80.hongbin]
  • CE07517 WBGene00020569 locus:lgc-32 status:Predicted UniProt:Q22588_CAEEL protein_id:AAK39299.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07517 WBGene00020569 locus:lgc-32 status:Predicted UniProt:Q22588_CAEEL protein_id:AAK39299.1| [wormORF-contam.fasta]
  • T19D7.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T19D7.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE07517 WBGene00020569 locus:lgc-32 status:Partially_confirmed UniProt:Q22588 protein_id:AAK39299.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
    • Organism: Caenorhabditis elegans
    Length: 497 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: lipid storage [IMP]
    transport [IEALink to PubMed article]
    Molecular Function: extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHFFLFVHF FKFSIFDAKF KLPMYQLFTV LRKIHWHRAD FFKQNILSHY FIPENNLIYP  60
   61 NFLDLILKMK YRIWILLIFI PIVVLCDDCT SDEDVIADLL GRNSHSSGEI VIKSNYKIAK 120
  121 WLYNSVAHEL STEGFFEMSW THLYSYFQKI FQYRKFDNSK SSCQKKLLKN WKIFLKIRKM 180
  181 LSLSRNVYII ATIYVKIYKN LHYKMCKLLF VLVRKICKFI KNRQLDRIMA GTNTTLDFTN 240
  241 LNACHKTVRI KSLLHIFWLP HVYFPFSYNL EESRNLYNIE IHESGNITLS KRLKQSIPCK 300
  301 EQSDSHPFSN NTCTLSWKYT NLDNYQKIVI EPSNLMDSVE REHSRQFILK DVTFESSGDD 360
  361 EQRLHYTITQ TPQYLLLHFF FPALLFLIPP WLSLLLGPMA ITRCIILMTS LILLSNHYDR 420
  421 NVTVFPIDAS LNAISIWQLF TYIYVIGIVI ELIIITLFAS MGRSKTCCFA KRRSAKYEME 480
  481 PLYEEMNDLR QRKTRLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] deduced N/A No confident structure predictions are available.
    2 View Details [133..497] PSI-BLAST 63.30103 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle