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Protein Overview: scrm-8

General Information:
Name(s) found: scrm-8 / CE07359 [WormBase]
Description(s) found:
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  • WBGene00019530 locus:scrm-8 status:Confirmed UniProt:Q21319 protein_id:CCD72717.1 [WormBase]
  • pir||T29384 hypothetical protein K08D10.7 - Caenorhabditis elegans [NCBI NR]
  • gi|17541330|ref|NP_500501.1| SCRaMblase (phospholipid scramblase) family member (scrm-8) [Caenorhabditis elegans] [NCBI NR]
  • gi|1280165|gb|AAA98029.1| Hypothetical protein K08D10.7 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE07359 WBGene00019530 status:Partially_confirmed TR:Q21319 protein_id:AAA98029.1 [wormpep150.fasta]
  • 07359 WBGene00019530 status:Partially_confirmed TR:Q21319 protein_id:AAA98029.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • scramblase family member (4E931) [Caenorhabditis elegans]gi|1280165|gb|AAA98029.1| Hypothetical protein K08D10.7 [Caenorhabditis elegans]gi|7505525|pir||T29384 hypothetical protein K08D10.7 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q21319 protein_id:AAA98029.1 [wormpep115.fasta.reversed]
  • CE07359 status:Predicted TR:Q21319 protein_id:AAA98029.1 [wormpep80.hongbin]
  • CE07359 WBGene00019530 locus:scrm-8 status:Partially_confirmed UniProt:Q21319_CAEEL protein_id:AAA98029.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07359 WBGene00019530 locus:scrm-8 status:Partially_confirmed UniProt:Q21319_CAEEL protein_id:AAA98029.1| [wormORF-contam.fasta]
  • K08D10.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein K08D10.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE07359 WBGene00019530 locus:scrm-8 status:Partially_confirmed TR:Q21319 protein_id:AAA98029.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE07359 WBGene00019530 locus:scrm-8 status:Confirmed UniProt:Q21319 protein_id:AAA98029.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE07359 WBGene00019530 locus:scrm-8 status:Confirmed UniProt:Q21319 protein_id:CCD72717.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • SCRaMblase (Phospholipid scramblase) OS=Caenorhabditis elegans GN=scrm-8 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: determination of adult lifespan [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIQPGQLPL KAISLTSAVK SPEEVEQDSK KDEPRAEGAG FGRRNNAGTK LPAARSTPMK  60
   61 IPNQVAAMPV QMTGFVQLAS NNILSAIAHT NSLMVVQCIE PLEIFTGFET PNRYVVHDMY 120
  121 CRPLLYCMER SNVFARQYHG NNRNFGMQIM DTHGAQVMTC FRGRPCCSCD DFLSTQFLDQ 180
  181 QIGMMKRECC NPNFELIGSG CNQPLLIQSP VCAGCGGTQK FPVMTYNGAL VGEIVRLYPG 240
  241 FMQEMFTDAD TYIVHFPMDM PPILKLLLVT SVFLIDFTYF EDRNQDRHHH GGMHGGMHSS 300
  301 F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] FFAS03 3.13 X-ray structure of protein from arabidopsis thaliana AT5G01750

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • signal transducer activity
    		•  1.40960604634475 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.40960604634475 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  1.20555655112374 bayes_pls_golite062009
  • receptor activity
    		•  1.15270506651032 bayes_pls_golite062009
  • binding
    		•  1.05855974212836 bayes_pls_golite062009
  • G-protein coupled photoreceptor activity
    		•  0.94252200727689 bayes_pls_golite062009
  • protein binding
    		•  0.6155304260359 bayes_pls_golite062009
  • photoreceptor activity
    		•  0.504277760871571 bayes_pls_golite062009
  • G-protein coupled receptor activity
    		•  0.450513229504489 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle