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Protein Overview: taf-11.1

General Information:
Name(s) found: taf-11.1 / CE07258 [WormBase]
Description(s) found:
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  • WBGene00006393 locus:taf-11.1 status:Confirmed UniProt:Q20563 protein_id:CCD67844.1 [WormBase]
  • pir||T29243 hypothetical protein F48D6.1 - Caenorhabditis elegans [NCBI NR]
  • gi|17570127|ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] [NCBI NR]
  • gi|1326282|gb|AAB00597.1| Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE07258 WBGene00006393 locus:taf-11.1 status:Confirmed TR:Q20563 protein_id:AAB00597.1 [wormpep150.fasta]
  • 07258 WBGene00006393 locus:taf-11.1 status:Confirmed TR:Q20563 protein_id:AAB00597.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • TBP-Associated transcription Factor family member (37.8 kD) (taf-11.1) [Caenorhabditis elegans]gi|1326282|gb|AAB00597.1| Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans]gi|7503744|pir||T29243 hypothetical protein F4 [nrdb_11152004_Chlamydomonas]
  • locus:taf-11.1 status:Partially_confirmed TR:Q20563 protein_id:AAB00597.1 [wormpep115.fasta.reversed]
  • CE07258 locus:taf-7.1 status:Partially_confirmed [wormpep80.hongbin]
  • CE07258 WBGene00006393 locus:taf-11.1 status:Confirmed UniProt:Q20563_CAEEL protein_id:AAB00597.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07258 WBGene00006393 locus:taf-11.1 status:Confirmed UniProt:Q20563_CAEEL protein_id:AAB00597.1| [wormORF-contam.fasta]
  • TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE07258 WBGene00006393 locus:taf-11.1 status:Confirmed UniProt:Q20563 protein_id:AAB00597.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE07258 WBGene00006393 locus:taf-11.1 status:Confirmed UniProt:Q20563 protein_id:CCD67844.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • TAF (TBP-associated transcription factor) family OS=Caenorhabditis elegans GN=taf-11.1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 345 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription [IEALink to PubMed article]
    Molecular Function: RNA polymerase II transcription factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNANDLFGGL SESSGSSDED DDTVMPQPTG AHNVLADLEL SDDDGDEDFS RDGMRSDENQ  60
   61 ISPGQESVPT PITPRAPVVF SLSDGEDSMD MPDIDQMMMK RNAAAAAAAA AEEQAAREAE 120
  121 ADRVAEANRA AETAKTAEKR KIDKISKSEP PRKQPRHDDN SEAGPSGQIS GDDDLLDTNI 180
  181 SLESFDLSKV NDARYQALIQ QHQPEEEAPG PSRPAPARPA RKLDDEEENE LSRLKTQVLL 240
  241 SNFSQEQLER YESYRRSSFQ KSTIRRLISQ YTGGVNVGQS VVIAIAGLAK VFVGEVVEEA 300
  301 LDIRDINEEE ASNPLQPHHI RQAFLRLGEQ GKLFPPIGPK QSHLE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] MSA 2.142996 View MSA. No confident structure predictions are available.
    2 View Details [185..345] PSI-BLAST 32.30103 TAF(II)28

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.581886805340955 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle