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Protein Overview: amt-1

General Information:
Name(s) found: amt-1 / CE06770 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00000133 locus:amt-1 Putative ammonium transporter 1 status:Partially_confirmed UniProt:P54145 protein_id:CCD63261.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 534 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: transport [IEALink to PubMed article]
    Molecular Function: ammonium transmembrane transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPTNFTTE IDKLHAEITR LETGFYENVN SFFLCSMALI IFFMQCGFAY LEAGAVRSKN  60
   61 TTNILIKNLL DSCICIIGYW AIGWALAYGD SGEGVNLFVG HSQFFLSGFS DYPRFFFQYV 120
  121 FSATAATIVS GAVAERCEFI TYVTYCTVIS TFIYPVLTHW GWTENGWMAK GITSGIIDTK 180
  181 YDDFAGSGLV HLCGGSISFL AAWIMGPRIG KFPDDEDDES DEILGHSVPF TALGGFILMF 240
  241 GFLAFNGGSV ASISHAGDGH TVALAMINTI LSGAFAALIY LGVHYYQHGK WTLLLTINAC 300
  301 LSGMVAACAG CNKMEPWACI WVGLGAGLIY LAFSKLMIRL KIDDPLDAFA VHAGGGFWGL 360
  361 MSSSIISHGG VAYALADAVS GAKNSGDHLT QAFAQLGWQM ICALAIIAWS LGVMLPIFWI 420
  421 LKKTGKLRVS EEVEINGLDV FKHGEMAYPL RAYGHGWHDF ERANKIQAFS AKITVGEGKN 480
  481 TRIMKIHPEM SIEQLASVYD RSGNIIPMPK KSRTLFTNSA ERKMSQMMYD ENKM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..454] PSI-BLAST 95.522879 No description for 2ns1A was found.
    2 View Details [455..534] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ammonium transmembrane transporter activity
    		•  10.0624820335928 bayes_pls_golite062009
  • organic cation transmembrane transporter activity
    		•  9.07420898067257 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  7.57181833547312 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  7.46308808953548 bayes_pls_golite062009
  • methylammonium transmembrane transporter activity
    		•  7.38326654060024 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  7.08971867997216 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  7.03159982829686 bayes_pls_golite062009
  • transporter activity
    		•  5.3870893301235 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  5.3046132351753 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  5.16067985999244 bayes_pls_golite062009
  • high affinity secondary active ammonium transmembrane transporter activity
    		•  3.56825523857899 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  2.81164277777293 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.08017669832334 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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