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Protein Overview: lpd-8

General Information:
Name(s) found: lpd-8 / CE06292 [WormBase]
Description(s) found:
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  • WBGene00003064 locus:lpd-8 status:Confirmed UniProt:Q21915 protein_id:CAA94609.1 [WormBase]
  • pir||T24151 hypothetical protein R10H10.1 - Caenorhabditis elegans [NCBI NR]
  • gi|3879150|emb|CAA94609.1| C. elegans protein R10H10.1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17541876|ref|NP_501917.1| LiPid Depleted family member (lpd-8) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE06292 WBGene00003064 locus:lpd-8 Yeast hypothetical protein YKE0 like status:Confirmed TR:Q21915 protein_id:CAA94609.1 [wormpep150.fasta]
  • 06292 WBGene00003064 locus:lpd-8 Yeast hypothetical protein YKE0 like status:Confirmed TR:Q21915 protein_id:CAA94609.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • HIRA interacting protein like, LiPid Depleted LPD-8 (lpd-8) [Caenorhabditis elegans]gi|3879150|emb|CAA94609.1| Hypothetical protein R10H10.1 [Caenorhabditis elegans]gi|7506596|pir||T24151 hypothetical protein R10H10.1 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:lpd-8 Yeast hypothetical protein YKE0 like status:Confirmed TR:Q21915 protein_id:CAA94609.1 [wormpep115.fasta.reversed]
  • CE06292 Yeast hypothetical protein YKE0 like status:Confirmed TR:Q21915 protein_id:CAA94609.1 [wormpep80.hongbin]
  • CE06292 WBGene00003064 locus:lpd-8 Yeast hypothetical protein YKE0 like status:Confirmed UniProt:Q21915_CAEEL protein_id:CAA94609.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE06292 WBGene00003064 locus:lpd-8 Yeast hypothetical protein YKE0 like status:Confirmed UniProt:Q21915_CAEEL protein_id:CAA94609.1| [wormORF-contam.fasta]
  • LiPid Depleted family member (lpd-8) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein R10H10.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE06292 WBGene00003064 locus:lpd-8 Yeast hypothetical protein YKE0 like status:Confirmed UniProt:Q21915 protein_id:CAA94609.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE06292 WBGene00003064 locus:lpd-8 status:Confirmed UniProt:Q21915 protein_id:CAA94609.1 [wormpep246-ecoli-contam.fasta]
  • LiPid Depleted OS=Caenorhabditis elegans GN=lpd-8 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 222 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lipid storage [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    lipid metabolic process [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    iron-sulfur cluster assembly [IEALink to PubMed article]
    Molecular Function: iron ion binding [IEALink to PubMed article]
    iron-sulfur cluster binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTRLNRSFV QAARSMYIQV QETPNPLSLK FLPGQQLLPD ASKTYDFSSA ATAKQSPLAI  60
   61 KLLRVDGVKR VFFGEDFVTV TKSDETVDWA LLRPEIFSTI ADHIQTGKPV INEAATVSDQ 120
  121 VEEDDEVVMM IKEILETRIR PMVQEDGGDI TYVGFDDGVV KLKMQGSCTG CPSSGVTLKN 180
  181 GIENMLTFYV PEVKEVIEVK DESDDLVEQE LKKFEQSKGI KD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] PSI-BLAST 9.221849 Solution Structure of the Hypothetical Staphylococcus Aureus protein SAV1430. Northest Strucutral Genomics Consortium target ZR18
    2 View Details [115..222] PSI-BLAST 27.221849 Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.60409960326459 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.28617491223126 bayes_pls_golite062009
  • 2 iron, 2 sulfur cluster binding
    		•  1.15693786817459 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  0.692336376163639 bayes_pls_golite062009
  • metal cluster binding
    		•  0.692336376163639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle