| Protein: | lpd-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 222 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lpd-8.
| Description | E-value | Query Range |
Subject Range |
|
|
277.0 | [0..2] | [222..7] |
|
|
268.0 | [0..5] | [210..47] |
|
|
268.0 | [0..5] | [210..36] |
|
|
267.0 | [0..5] | [210..47] |
|
|
265.0 | [0..5] | [210..46] |
|
|
263.0 | [0..5] | [210..48] |
|
|
263.0 | [0..5] | [210..48] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MLTRLNRSFV QAARSMYIQV QETPNPLSLK FLPGQQLLPD ASKTYDFSSA ATAKQSPLAI 60
61 KLLRVDGVKR VFFGEDFVTV TKSDETVDWA LLRPEIFSTI ADHIQTGKPV INEA
|
| Detection Method: |  |
| Confidence: | 9.221849 |
| Match: | 1pqxA |
| Description: | Solution Structure of the Hypothetical Staphylococcus Aureus protein SAV1430. Northest Strucutral Genomics Consortium target ZR18 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.60409960326459 | bayes_pls_golite062009 |
|
Region A: Residues: [115-222] |
1 11 21 31 41 51
| | | | | |
1 ATVSDQVEED DEVVMMIKEI LETRIRPMVQ EDGGDITYVG FDDGVVKLKM QGSCTGCPSS 60
61 GVTLKNGIEN MLTFYVPEVK EVIEVKDESD DLVEQELKKF EQSKGIKD
|
| Detection Method: | |
| Confidence: | 27.221849 |
| Match: | 1vehA |
| Description: | Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.28617491223126 | bayes_pls_golite062009 |
| 2 iron, 2 sulfur cluster binding | 1.15693786817459 | bayes_pls_golite062009 |
| iron-sulfur cluster binding | 0.692336376163639 | bayes_pls_golite062009 |
| metal cluster binding | 0.692336376163639 | bayes_pls_golite062009 |
