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Protein Overview: aly-3

General Information:
Name(s) found: aly-3 / CE06198 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00000122 locus:aly-3 status:Confirmed UniProt:Q21559 protein_id:CAA92829.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 240 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: hermaphrodite genitalia development [IMP]
    protein catabolic process [IMP]
    reproduction [IMP]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKATNVDLS LEDIISKTRK TTGSIQKKSF GGARRGNTRP TGLPRRSGGS GGWKDLDAVQ  60
   61 NHGISSRGND SKVIRVNISN LAPTVISSDL EELFGDYRLS SVSVNFNEHG DSLGTGDISL 120
  121 TKRDAERLVQ KFSGVALDGK IMKFAVIDSS NMAGRVDFGN RSRSSPGRSS RGFQSGPRRN 180
  181 NGKPEDFLRD GVHAGDIKRG GAGRGGFRKG GRGGARDAKP KKTEAELDAE LEAYMAKRNA 240
  241

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..155] PSI-BLAST 32.39794 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [156..240] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle