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Protein Overview: lys-5

General Information:
Name(s) found: lys-5 / CE06004 [WormBase]
Description(s) found:
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  • WBGene00003094 locus:lys-5 status:Confirmed UniProt:Q20967 protein_id:CAA97800.1 [WormBase]
  • pir||T22895 hypothetical protein F58B3.2 - Caenorhabditis elegans [NCBI NR]
  • gi|3877881|emb|CAA97800.1| C. elegans protein F58B3.2, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17540788|ref|NP_502193.1| LYSozyme family member (lys-5) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE06004 WBGene00003094 locus:lys-5 status:Partially_confirmed TR:Q20967 protein_id:CAA97800.1 [wormpep150.fasta]
  • 06004 WBGene00003094 locus:lys-5 status:Partially_confirmed TR:Q20967 protein_id:CAA97800.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • lysozyme (lys-5) [Caenorhabditis elegans]gi|3877881|emb|CAA97800.1| Hypothetical protein F58B3.2 [Caenorhabditis elegans]gi|7504590|pir||T22895 hypothetical protein F58B3.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:lys-5 status:Partially_confirmed TR:Q20967 protein_id:CAA97800.1 [wormpep115.fasta.reversed]
  • CE06004 locus:lys-5 status:Predicted TR:Q20967 protein_id:CAA97800.1 [wormpep80.hongbin]
  • CE06004 WBGene00003094 locus:lys-5 status:Confirmed UniProt:Q20967_CAEEL protein_id:CAA97800.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE06004 WBGene00003094 locus:lys-5 status:Confirmed UniProt:Q20967_CAEEL protein_id:CAA97800.1| [wormORF-contam.fasta]
  • Hypothetical protein F58B3.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • LYSozyme family member (lys-5) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE06004 WBGene00003094 locus:lys-5 status:Confirmed TR:Q20967 protein_id:CAA97800.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE06004 WBGene00003094 locus:lys-5 status:Confirmed UniProt:Q20967 protein_id:CAA97800.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • LYSozyme OS=Caenorhabditis elegans GN=lys-5 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 215 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: cell wall macromolecule catabolic process [IEALink to PubMed article]
    peptidoglycan catabolic process [IEALink to PubMed article]
    Molecular Function: lysozyme activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHFFITILL FCSVVSAARN GIDINSPVST STFTCIKNAG FSFIIPRIYH SSGSVDTVGV  60
   61 QNVKNARAAG LTDVDGYIFP CLKSTCASAA NQVKASLDAV KAAGTKISTL WLDIERLNWP 120
  121 ADHASNRAFI EAMVSEAKAY GQQVGIYSNY YNWQDIVGLD YHGQSSLMLW WPAYDGVKDF 180
  181 SKYAPFGGWS KPTIHQWSDT TTGPCGVSVD MNYIP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..215] PSI-BLAST 43.154902 Streptomyces lysozyme

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.32563207632796 bayes_pls_golite062009
  • hydrolase activity
    		•  0.85514037342026 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.80912338090552 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  0.41375210927547 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle