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View Structure Prediction Details

Protein: lys-5
Organism: Caenorhabditis elegans
Length: 215 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys-5.

Description E-value Query
Range
Subject
Range
lys-4 - status:Confirmed UniProt:Q20964 protein_id:CAA97797.1
223.0 [0..4] [215..3]
gi|157755805 - gi|157755805|ref|XP_001670246.1| Hypothetical protein CBG06112 [Caenorhabditis briggsae AF16]
gi|39593795, gi|... - gi|39593795|emb|CAE62088.1| Hypothetical protein CBG06112 [Caenorhabditis briggsae], gi|187034449|em...
210.0 [0..20] [215..19]
LYSG2_DICDI - Probable GH family 25 lysozyme 2 OS=Dictyostelium discoideum GN=DDB_G0274181 PE=3 SV=1
gi|66821683, gi|... - gi|66821683|ref|XP_644284.1| hypothetical protein [Dictyostelium discoideum AX4], gi|60472030|gb|EAL...
192.0 [0..3] [215..5]
gi|110632992, gi... - gi|110632992|ref|YP_673200.1| glycoside hydrolase family protein [Mesorhizobium sp. BNC1], gi|110283...
189.0 [0..15] [214..125]
gi|23500234, gi|... - gi|23500234|ref|NP_699674.1| glycosy hydrolase family protein [Brucella suis 1330], gi|23463839|gb|A...
184.0 [0..18] [214..123]
gi|25503473 - pir||F95925 probable cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein (EC...
gi|15140555, gi|... - gi|16264418|ref|NP_437210.1| putative cell-wall lytic enzyme, muramidase (lysozyme) protein [Sinorhi...
184.0 [0..18] [214..130]

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Predicted Domain #1
Region A:
Residues: [1-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHFFITILL FCSVVSAARN GIDINSPVST STFTCIKNAG FSFIIPRIYH SSGSVDTVGV  60
   61 QNVKNARAAG LTDVDGYIFP CLKSTCASAA NQVKASLDAV KAAGTKISTL WLDIERLNWP 120
  121 ADHASNRAFI EAMVSEAKAY GQQVGIYSNY YNWQDIVGLD YHGQSSLMLW WPAYDGVKDF 180
  181 SKYAPFGGWS KPTIHQWSDT TTGPCGVSVD MNYIP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.154902
Match: 1jfxA
Description: Streptomyces lysozyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.32563207632796 bayes_pls_golite062009
hydrolase activity 0.85514037342026 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 0.80912338090552 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 0.41375210927547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle